Tudóstér: Fuxreiter Mónika publikációi

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feltöltött közlemény: 100 Open Access: 24
2023
  1. Gönczi, M., Teixeira, J., Barrera-Vilarmau, S., Mediani, L., Antoniani, F., Nagy, T., Fehér, K., Ráduly, Z., Ambrus, V., Tőzsér, J., Barta, E., Kövér, K., Csernoch, L., Carra, S., Fuxreiter, M.: Alternatively spliced exon regulates context-dependent MEF2D higher-order assembly during myogenesis.
    Nat Comms. 14 1329, 2023.
    Folyóirat-mutatók:
    D1 Biochemistry, Genetics and Molecular Biology (miscellaneous)
    D1 Chemistry (miscellaneous)
    D1 Physics and Astronomy (miscellaneous)
2022
  1. Hatos, A., Monzon, A., Tosatto, S., Piovesan, D., Fuxreiter, M.: FuzDB: a new phase in understanding fuzzy interactions.
    Nucleic Acids Res. 50 (D1), D509-D517, 2022.
    Folyóirat-mutatók:
    D1 Genetics
  2. Monzon, A., Piovesan, D., Fuxreiter, M.: Molecular Determinants of Selectivity in Disordered Complexes May Shed Light on Specificity in Protein Condensates.
    Biomolecules. 12 (1), 1-12, 2022.
    Folyóirat-mutatók:
    Q1 Biochemistry
    Q2 Molecular Biology
  3. Györkei, Á., Daruka, L., Balogh, D., Őszi, E., Magyar, Z., Szappanos, B., Fekete, G., Fuxreiter, M., Horváth, P., Pál, C., Kintses, B., Papp, B.: Proteome-wide landscape of solubility limits in a bacterial cell.
    Sci. Rep. 12 (1), 1-13, 2022.
    Folyóirat-mutatók:
    D1 Multidisciplinary
  4. Vendruscolo, M., Fuxreiter, M.: Sequence determinants of the aggregation of proteins within condensates generated by liquid-liquid phase separation.
    J. Mol. Biol. 434 (1), 1-12, 2022.
    Folyóirat-mutatók:
    D1 Biophysics
    Q1 Molecular Biology
    Q1 Structural Biology
2021
  1. Freiberger, M., Wolynes, P., Ferreiro, D., Fuxreiter, M.: Frustration in Fuzzy Protein Complexes Leads to Interaction Versatility.
    J. Phys. Chem. B. 125 (10), 2513-2520, 2021.
    Folyóirat-mutatók:
    Q1 Materials Chemistry
    Q2 Medicine (miscellaneous)
    Q1 Physical and Theoretical Chemistry
    Q1 Surfaces, Coatings and Films
  2. Gianni, S., Freiberger, M., Jemth, P., Ferreiro, D., Wolynes, P., Fuxreiter, M.: Fuzziness and Frustration in the Energy Landscape of Protein Folding, Function, and Assembly.
    Accounts Chem. Res. 54 (5), 1251-1259, 2021.
    Folyóirat-mutatók:
    D1 Chemistry (miscellaneous)
    D1 Medicine (miscellaneous)
  3. Fuxreiter, M., Vendruscolo, M.: Generic nature of the condensed states of proteins.
    Nat. Cell Biol. 23 (6), 587-594, 2021.
    Folyóirat-mutatók:
    D1 Cell Biology
  4. Piovesan, D., Necci, M., Escobedo, N., Monzon, A., Hatos, A., Mičetić, I., Quaglia, F., Paladin, L., Ramasamy, P., Dosztányi, Z., Vranken, W., Davey, N., Parisi, G., Fuxreiter, M., Tosatto, S.: MobiDB: intrinsically disordered proteins in 2021.
    Nucleic Acids Res. 49 (D1), D361-D367, 2021.
    Folyóirat-mutatók:
    D1 Genetics
  5. Hardenberg, M., Sinnige, T., Casford, S., Dada, S., Poudel, C., Robinson, E., Fuxreiter, M., Kaminksi, C., Kaminski-Schierle, G., Nollen, E., Dobson, C., Vendruscolo, M.: Observation of an α-synuclein liquid droplet state and its maturation into Lewy body-like assemblies.
    Journal of Molecular Cell Biology 13 (4), 282-294, 2021.
    Folyóirat-mutatók:
    Q1 Cell Biology
    Q1 Genetics
    D1 Medicine (miscellaneous)
    Q1 Molecular Biology
  6. Fuxreiter, M.: Spot in a drop: mutations in aberrant condensates.
    Nat. Rev. Mol. Cell Biol. 22 (3), 162-163, 2021.
2020
  1. Ambrus, V., Hoffka, G., Fuxreiter, M.: Asymmetric dynamic coupling promotes alternative evolutionary pathways in an enzyme dimer.
    Sci. Rep. 10 (1), 1-9, 2020.
    Folyóirat-mutatók:
    D1 Multidisciplinary
  2. Fuxreiter, M.: Classifying the Binding Modes of Disordered Proteins.
    Int. J. Mol. Sci. 21 (22), 1-9, 2020.
    Folyóirat-mutatók:
    Q2 Catalysis
    D1 Computer Science Applications
    D1 Inorganic Chemistry
    Q1 Medicine (miscellaneous)
    Q2 Molecular Biology
    D1 Organic Chemistry
    D1 Physical and Theoretical Chemistry
    D1 Spectroscopy
  3. Fuxreiter, M.: Fuzzy protein theory for disordered proteins.
    Biochem. Soc. Trans. 48 (6), 2557-2564, 2020.
    Folyóirat-mutatók:
    D1 Biochemistry
  4. Zsólyomi, F., Ambrus, V., Fuxreiter, M.: Patterns of Dynamics Comprise a Conserved Evolutionary Trait.
    J. Mol. Biol. 432 (2), 497-507, 2020.
    Folyóirat-mutatók:
    D1 Biophysics
    Q1 Molecular Biology
    Q1 Structural Biology
  5. Kubatova, N., Pyper, D., Jonker, H., Saxena, K., Remmel, L., Richter, C., Brantl, S., Evguenieva-Hackenberg, E., Hess, W., Klug, G., Marchfelder, A., Soppa, J., Streit, W., Mayzel, M., Orekhov, V., Fuxreiter, M., Schmitz, R., Schwalbe, H.: Rapid Biophysical Characterization and NMR Spectroscopy Structural Analysis of Small Proteins from Bacteria and Archaea.
    ChemBioChem. 21 (8), 1178-1187, 2020.
    Folyóirat-mutatók:
    Q2 Biochemistry
    Q2 Molecular Biology
    Q2 Molecular Medicine
    Q1 Organic Chemistry
  6. Miskei, M., Horváth, A., Vendruscolo, M., Fuxreiter, M.: Sequence-Based Prediction of Fuzzy Protein Interactions.
    J. Mol. Biol. 432 (7), 2289-2303, 2020.
    Folyóirat-mutatók:
    D1 Biophysics
    Q1 Molecular Biology
    Q1 Structural Biology
  7. Horváth, A., Miskei, M., Ambrus, V., Vendruscolo, M., Fuxreiter, M.: Sequence-based prediction of protein binding mode landscapes.
    PLoS Comput. Biol. 16 (5), 1-19, 2020.
    Folyóirat-mutatók:
    Q1 Cellular and Molecular Neuroscience
    D1 Computational Theory and Mathematics
    D1 Ecology
    D1 Ecology, Evolution, Behavior and Systematics
    Q1 Genetics
    D1 Modeling and Simulation
    Q1 Molecular Biology
  8. Hardenberg, M., Horváth, A., Ambrus, V., Fuxreiter, M., Vendruscolo, M.: Widespread occurrence of the droplet state of proteins in the human proteome.
    Proc. Natl. Acad. Sci. U. S. A. 117 (52), 33254-33262-, 2020.
    Folyóirat-mutatók:
    D1 Multidisciplinary
2019
  1. Tüű-Szabó, B., Hoffka, G., Duró, N., Fuxreiter, M.: Altered dynamics may drift pathological fibrillization in membraneless organelles.
    Biochim. Biophys. Acta. Proteins Proteom. 1867 (10), 988-998, 2019.
    Folyóirat-mutatók:
    Q1 Analytical Chemistry
    Q2 Biochemistry
    Q1 Biophysics
    Q2 Molecular Biology
  2. Fuxreiter, M., Panchenko, A.: Editorial overview: Dynamic protein interactions - from complexes to molecular machines.
    Curr. Opin. Struct. Biol. 56 vi-viii, 2019.
  3. Fuxreiter, M.: Fold or not to fold upon binding - does it really matter?.
    Curr. Opin. Struct. Biol. 54 19-25, 2019.
    Folyóirat-mutatók:
    D1 Molecular Biology
    D1 Structural Biology
  4. Sharma, R., Demény, M., Ambrus, V., Király, S., Kurtán, T., Gatti-Lafranconi, P., Fuxreiter, M.: Specific and fuzzy interactions cooperate in modulating protein half-life.
    J. Mol. Biol. 431 (8), 1700-1707, 2019.
    Folyóirat-mutatók:
    D1 Biophysics
    D1 Molecular Biology
    Q1 Structural Biology
2018
  1. Troilo, F., Bignon, C., Gianni, S., Fuxreiter, M., Longhi, S.: Experimental Characterization of Fuzzy Protein Assemblies: Interactions of Paramyxoviral NTAIL Domains With Their Functional Partners.
    In: Intrinsically Disordered Proteins / edited by Elizabeth Rhoades, Academic Press, New York, 137-192, 2018, (Methods In Enzymology, ISSN 0076-6879 ; 611.) ISBN: 9780128156490
  2. Fuxreiter, M.: Fuzziness in Protein Interactions: a Historical Perspective.
    J. Mol. Biol. 430 (16), 2278-2287, 2018.
    Folyóirat-mutatók:
    D1 Molecular Biology
    Q1 Structural Biology
  3. Boeynaems, S., Alberti, S., Fawzi, N., Mittag, T., Polymenidou, M., Rousseau, F., Schymkowitz, J., Shorter, J., Wolozin, B., Bosch, L., Tompa, P., Fuxreiter, M.: Protein Phase Separation: a New Phase in Cell Biology.
    Trends Cell Biol. 28 (6), 420-435, 2018.
    Folyóirat-mutatók:
    D1 Cell Biology
  4. Tüű-Szabó, B., Kóczy, L., Fuxreiter, M.: Simulations of higher-order protein assemblies using a fuzzy framework.
    BioRxiv 2018 1-10, 2018.
  5. Tüű-Szabó, B., Kóczy, L., Fuxreiter, M.: Simulations of Higher-Order Protein Organizations Using a Fuzzy Framework.
    Complexity. 2018 1-11, 2018.
    Folyóirat-mutatók:
    Q1 Multidisciplinary
  6. Fuxreiter, M.: Towards a Stochastic Paradigm: from Fuzzy Ensembles to Cellular Functions.
    Molecules. 23 (11), 1-10, 2018.
    Folyóirat-mutatók:
    Q2 Analytical Chemistry
    Q1 Chemistry (miscellaneous)
    Q2 Drug Discovery
    Q2 Medicine (miscellaneous)
    Q3 Molecular Medicine
    Q2 Organic Chemistry
    Q1 Pharmaceutical Science
    Q2 Physical and Theoretical Chemistry
2017
  1. Thangaraju, K., Király, R., Mótyán, J., Ambrus, V., Fuxreiter, M., Fésüs, L.: Computational analyses of the effect of novel amino acid clusters of human transglutaminase 2 on its structure and function.
    Amino Acids. 49 605-614, 2017.
    Folyóirat-mutatók:
    Q2 Biochemistry
    Q1 Clinical Biochemistry
    Q1 Organic Chemistry
  2. Miskei, M., Antal, C., Fuxreiter, M.: FuzDB: database of fuzzy complexes, a tool to develop stochastic structure-function relationships for protein complexes and higher-order assemblies.
    Nucleic Acids Res. 45 D228-D235, 2017.
    Folyóirat-mutatók:
    D1 Genetics
  3. Miskei, M., Gregus, A., Sharma, R., Duró, N., Zsólyomi, F., Fuxreiter, M.: Fuzziness enables context dependence of protein interactions.
    FEBS Lett. 591 (17), 2682-2695, 2017.
    Folyóirat-mutatók:
    Q1 Biochemistry
    D1 Biophysics
    Q2 Cell Biology
    Q1 Genetics
    Q2 Molecular Biology
    Q2 Structural Biology
  4. Thangaraju, K., Király, R., Demény, M., Mótyán, J., Fuxreiter, M., Fésüs, L.: Genomic variants reveal differential evolutionary constraints on human transglutaminases and point towards unrecognized significance of transglutaminase 2.
    PLoS One. 12 (3), 1-24, 2017.
    Folyóirat-mutatók:
    Q1 Agricultural and Biological Sciences (miscellaneous)
    Q1 Biochemistry, Genetics and Molecular Biology (miscellaneous)
    Q1 Medicine (miscellaneous)
  5. Sormanni, P., Piovesan, D., Heller, G., Bonomi, M., Kukic, P., Camilloni, C., Fuxreiter, M., Dosztányi, Z., Pappu, R., Babu, M., Longhi, S., Tompa, P., Dunker, A., Uversky, V., Tosatto, S., Vendruscolo, M.: Simultaneous quantification of protein order and disorder.
    Nat. Chem. Biol. 13 (4), 339-342, 2017.
    Folyóirat-mutatók:
    D1 Cell Biology
    D1 Molecular Biology
2016
  1. Nnamani, M., Ganguly, S., Erkenbrack, E., Lynch, V., Mizoue, L., Tong, Y., Darling, H., Fuxreiter, M., Meiler, J., Wagner, G.: A Derived Allosteric Switch Underlies the Evolution of Conditional Cooperativity between HOXA11 and FOXO1.
    Cell Reports. 15 (10), 2097-2108, 2016.
    Folyóirat-mutatók:
    D1 Biochemistry, Genetics and Molecular Biology (miscellaneous)
  2. Gruet, A., Dosnon, M., Blocquel, D., Brunel, J., Gerlier, D., Das, R., Bonetti, D., Gianni, S., Fuxreiter, M., Longhi, S., Bignon, C.: Fuzzy regions in an intrinsically disordered protein impair protein-protein interactions.
    FEBS J. 283 (4), 576-594, 2016.
    Folyóirat-mutatók:
    Q1 Biochemistry
    Q1 Cell Biology
    Q1 Molecular Biology
  3. Wu, H., Fuxreiter, M.: The Structure and Dynamics of Higher-Order Assemblies: amyloids, Signalosomes, and Granules.
    Cell. 165 (5), 1055-1066, 2016.
    Folyóirat-mutatók:
    D1 Biochemistry, Genetics and Molecular Biology (miscellaneous)
2015
  1. Duró, N., Miskei, M., Fuxreiter, M.: Fuzziness endows viral motif-mimicry.
    Mol. Biosyst. 11 (10), 2821-2829, 2015.
    Folyóirat-mutatók:
    Q1 Biotechnology
    Q2 Molecular Biology
  2. Sharma, R., Ráduly, Z., Miskei, M., Fuxreiter, M.: Fuzzy complexes: specific binding without complete folding.
    FEBS Lett. 589 (19), 2533-2542, 2015.
    Folyóirat-mutatók:
    Q1 Biochemistry
    D1 Biophysics
    Q2 Cell Biology
    Q1 Genetics
    Q1 Molecular Biology
    Q1 Structural Biology
  3. Kanchan, K., Fuxreiter, M., Fésüs, L.: Physiological, pathological, and structural implications of nonenzymatic protein-protein interactions of the multifunctional human transglutaminase 2.
    Cell. Mol. Life Sci. 72 (16), 3009-3035, 2015.
    Folyóirat-mutatók:
    Q1 Cell Biology
    D1 Cellular and Molecular Neuroscience
    Q1 Molecular Biology
    D1 Molecular Medicine
    D1 Pharmacology
2014
  1. Lee, R., Buljan, M., Lang, B., Weatheritt, R., Daughdrill, G., Dunker, A., Fuxreiter, M., Gough, J., Gsponer, J., Jones, D., Kim, P., Kriwacki, R., Oldfield, C., Pappu, R., Tompa, P., Uversky, V., Wright, P., Babu, M.: Classification of intrinsically disordered regions and proteins.
    Chem. Rev. 114 (13), 6589-6631, 2014.
    Folyóirat-mutatók:
    D1 Chemistry (miscellaneous)
  2. Fuxreiter, M.: Computational approaches to protein dynamics: from quantum to coarse-grained methods.
    Crc Press-Taylor & Francis Group, Boca Raton, 468 p p., 2014.
  3. Fuxreiter, M., Tóth-Petróczy, Á., Kraut, D., Matouschek, A., Lim, R., Xue, B., Kurgan, L., Uversky, V.: Disordered Proteinaceous Machines.
    Chem. Rev. 114 (13), 6806-6843, 2014.
    Folyóirat-mutatók:
    D1 Chemistry (miscellaneous)
  4. Lee, R., Lang, B., Kruse, K., Gsponer, J., Sánchez de, G., Huynen, M., Matouschek, A., Fuxreiter, M., Babu, M.: Intrinsically Disordered Segments Affect Protein Half-Life in the Cell and during Evolution.
    Cell Rep. 8 (6), 1832-1844, 2014.
    Folyóirat-mutatók:
    D1 Biochemistry, Genetics and Molecular Biology (miscellaneous)
  5. Fuxreiter, M., Mones, L.: The role of reorganization energy in rational enzyme design.
    Curr. Opin. Chem. Biol. 21C 34-41, 2014.
    Folyóirat-mutatók:
    D1 Analytical Chemistry
    D1 Biochemistry
2013
  1. Buljan, M., Chalancon, G., Dunker, A., Bateman, A., Balaji, S., Fuxreiter, M., Babu, M.: Alternative splicing of intrinsically disordered regions and rewiring of protein interactions.
    Curr. Opin. Struct. Biol. 23 (3), 443-450, 2013.
    Folyóirat-mutatók:
    D1 Molecular Biology
    D1 Structural Biology
  2. Kanchan, K., Ergülen, E., Király, R., Simon-Vecsei, Z., Fuxreiter, M., Fésüs, L.: Identification of a specific one amino acid change in recombinant human transglutaminase 2 that regulates its activity and calcium sensitivity.
    Biochem. J. 455 (3), 261-272, 2013.
    Folyóirat-mutatók:
    D1 Biochemistry
    Q1 Cell Biology
    Q1 Molecular Biology
  3. Lábas, A., Szabó, E., Mones, L., Fuxreiter, M.: Optimization of reorganization energy drives evolution of the designed Kemp eliminase KE07.
    Biochim. Biophys. Acta. Proteins Proteom. 1834 (5), 908-917, 2013.
    Folyóirat-mutatók:
    D1 Analytical Chemistry
    Q1 Biochemistry
    D1 Biophysics
    Q2 Molecular Biology
  4. Dunker, A., Babu, M., Barbar, E., Blackledge, M., Bondos, S., Dosztányi, Z., Dyson, H., Forman-Kay, J., Fuxreiter, M., Gsponer, J., Han, K., Jones, D., Longhi, S., Metallo, S., Nishikawa, K., Nussinov, R., Obradovic, Z., Pappu, R., Rost, B., Selenko, P., Subramaniam, V., Sussman, J., Tompa, P., Uversky, V.: What's in a name?: Why these proteins are intrinsically disordered.
    Intrinsically Disord. Prot. 1 (1), 2013.
2012
  1. Fuxreiter, M.: Fuzziness: linking regulation to protein dynamics.
    Mol. BioSyst. 8 (1), 168-177, 2012.
    Folyóirat-mutatók:
    Q1 Biotechnology
    Q2 Molecular Biology
  2. Fuxreiter, M., Tompa, P.: Fuzzy complexes: a more stochastic view of protein function.
    In: Fuzziness : structural disorder in protein complexes. Ed.: by Monika Fuxreiter, Peter Tompa, Springer Science+Business Media ; New York : Landes Bioscience, Austin, TX, 1-14, 2011. ISBN: 9781461406587
  3. Pancsa, R., Fuxreiter, M.: Interactions via intrinsically disordered regions: what kind of motifs?.
    IUBMB Life. 64 (6), 513-520, 2012.
    Folyóirat-mutatók:
    Q1 Biochemistry
    Q2 Cell Biology
    Q1 Clinical Biochemistry
    Q2 Genetics
    Q2 Molecular Biology
  4. Bernstein, N., Várnai, C., Solt, I., Winfield, S., Payne, M., Simon, I., Fuxreiter, M., Csányi, G.: QM/MM simulation of liquid water with an adaptive quantum region.
    Phys. Chem. Chem. Phys. 14 (2), 646-656, 2012.
    Folyóirat-mutatók:
    Q1 Physical and Theoretical Chemistry
    D1 Physics and Astronomy (miscellaneous)
  5. Buljan, M., Chalancon, G., Eustermann, S., Wagner, G., Fuxreiter, M., Bateman, A., Babu, M.: Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks.
    Mol. Cell. 46 (6), 871-883, 2012.
    Folyóirat-mutatók:
    D1 Cell Biology
    D1 Molecular Biology
2011
  1. Di Paolo, M., Lunelli, M., Fuxreiter, M., Rigo, A., Simon, I., Scarpa, M.: Active site residue involvement in monoamine or diamine oxidation catalysed by pea seedling amine oxidase.
    FEBS J. 278 (8), 1232-1243, 2011.
    Folyóirat-mutatók:
    Q1 Biochemistry
    Q2 Cell Biology
    Q2 Molecular Biology
  2. Fuxreiter, M., Simon, I., Bondos, S.: Dynamic protein-DNA recognition: beyond what can be seen.
    Trends in biochemical sciences. 36 (8), 415-423, 2011.
    Folyóirat-mutatók:
    D1 Biochemistry
    D1 Molecular Biology
  3. Tompa, P., Fuxreiter, M.: Fuzziness: structural disorder in protein complexes.
    Springer, New York, 214 p., 2011. ISBN: 9781461406587
2009
  1. Tompa, P., Fuxreiter, M., Oldfield, C., Simon, I., Dunker, A., Uversky, V.: Close encounters of the third kind: disordered domains and the interactions of proteins.
    Bioessays. 31 (3), 328-335, 2009.
    Folyóirat-mutatók:
    D1 Biochemistry, Genetics and Molecular Biology (miscellaneous)
  2. Tóth-Petróczy, Á., Simon, I., Fuxreiter, M., Levy, Y.: Disordered tails of homeodomains facilitate DNA recognition by providing a trade-off between folding and specific binding.
    J. Am. Chem. Soc. 131 (42), 15084-15085, 2009.
    Folyóirat-mutatók:
    D1 Biochemistry
    D1 Catalysis
    D1 Chemistry (miscellaneous)
    D1 Colloid and Surface Chemistry
  3. Solt, I., Kulhánek, P., Simon, I., Winfield, S., Payne, M., Csányi, G., Fuxreiter, M.: Evaluating boundary dependent errors in QM/MM simulations.
    J. Phys. Chem. B. 113 (17), 5728-5735, 2009.
    Folyóirat-mutatók:
    D1 Materials Chemistry
    D1 Medicine (miscellaneous)
    D1 Physical and Theoretical Chemistry
    D1 Surfaces, Coatings and Films
  4. Fuxreiter, M., Tompa, P.: Fuzzy interactome: the limitations of models in molecular biology.
    Trends biochem. sci. 34 (1), 3, 2009.
  5. Uversky, V., Fuxreiter, M., Oldfield, C., Dunker, A., Tompa, P.: Intrinsically disordered proteins and their recognition functions.
    In: Computational protein-protein interaction. Ed.: by Ruth Nussinov, Gideon Scheiber, CRC Press, Boca Raton, 223-253, 2009. ISBN: 9781420070057
  6. Pingoud, V., Wende, W., Friedhoff, P., Reuter, M., Alves, J., Jeltsch, A., Mones, L., Fuxreiter, M., Pingoud, A.: On the divalent metal ion dependence of DNA cleavage by restriction endonucleases of the EcoRI family.
    J. Mol. Biol. 393 (1), 140-160, 2009.
    Folyóirat-mutatók:
    Q1 Molecular Biology
    Q1 Structural Biology
  7. Mones, L., Kulhánek, P., Simon, I., Laio, A., Fuxreiter, M.: The energy gap as a universal reaction coordinate for the simulation of chemical reactions.
    J. Phys. Chem. 113 (22), 7867-7873, 2009.
    Folyóirat-mutatók:
    D1 Materials Chemistry
    D1 Medicine (miscellaneous)
    D1 Physical and Theoretical Chemistry
    D1 Surfaces, Coatings and Films
2008
  1. Tóth-Petróczy, Á., Mészáros, B., Simon, I., Dunker, A., Uversky, V., Fuxreiter, M.: Assessing conservation of disordered regions in proteins.
    Open Prot. J. 1 (1), 46-53, 2008.
  2. Tompa, P., Fuxreiter, M.: Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions.
    Trends biochem. sci. 33 (1), 2-8, 2008.
    Folyóirat-mutatók:
    D1 Biochemistry
    D1 Molecular Biology
  3. Tóth-Petróczy, Á., Oldfield, C., Simon, I., Takagi, Y., Dunker, A., Uversky, V., Fuxreiter, M.: Malleable machines in transcription regulation: the mediator complex.
    PLoS Comput. Biol. 4 (12), e1000243, 2008.
    Folyóirat-mutatók:
    D1 Cellular and Molecular Neuroscience
    D1 Computational Theory and Mathematics
    D1 Ecology
    D1 Ecology, Evolution, Behavior and Systematics
    D1 Genetics
    D1 Modeling and Simulation
    Q1 Molecular Biology
  4. Fuxreiter, M., Tompa, P., Simon, I., Uversky, V., Hansen, J., Asturias, F.: Malleable machines take shape in eukaryotic transcriptional regulation.
    Nat. Chem. Biol. 4 (12), 728-737, 2008.
    Folyóirat-mutatók:
    Q1 Cell Biology
    D1 Molecular Biology
  5. Tompa, P., Fuxreiter, M.: Residual structure and binding functions of intrinsically disordered proteins.
    In: Unfolded proteins : from Denatured to Intrinsically Disordered. Ed.: Trevor P. Creamer, Nova Science Publishers Inc., New York, 213-235, 2008. ISBN: 1604561074
2007
  1. Chuluunbaatar, T., Ivanenko-Johnston, T., Fuxreiter, M., Meleshko, R., Raskó, T., Simon, I., Heitman, J., Kiss, A.: An EcoRI-RsrI chimeric restriction endonuclease retains parental sequence specificity.
    Biochim. Biophys. Acta. Proteins Proteom. 1774 (5), 583-594, 2007.
    Folyóirat-mutatók:
    Q1 Analytical Chemistry
    Q1 Biochemistry
    Q1 Biophysics
    Q2 Molecular Biology
  2. Solt, I., Simon, I., Császár, A., Fuxreiter, M.: Electrostatic versus nonelectrostatic effects in DNA sequence discrimination by divalent ions Mg2+ and Mn2+.
    J. Phys. Chem. B. 111 (22), 6272-6279, 2007.
    Folyóirat-mutatók:
    D1 Materials Chemistry
    D1 Medicine (miscellaneous)
    D1 Physical and Theoretical Chemistry
    D1 Surfaces, Coatings and Films
  3. Németh-Pongrácz, V., Barabás, O., Fuxreiter, M., Simon, I., Pichová, I., Rumlová, M., Zábranská, H., Svergun, D., Petoukhov, M., Harmat, V., Klement, É., Hunyadi-Gulyás, É., Medzihradszky-Fölkl, K., Kónya, E., Vértessy, B.: Flexible segments modulate co-folding of dUTPase and nucleocapsid proteins.
    Nucleic acids res. 35 (2), 495-505, 2007.
    Folyóirat-mutatók:
    D1 Genetics
  4. Fuxreiter, M., Tompa, P., Simon, I.: Local structural disorder imparts plasticity on linear motifs.
    Bioinformatics. 23 (8), 950-956, 2007.
    Folyóirat-mutatók:
    D1 Biochemistry
    D1 Computational Mathematics
    D1 Computational Theory and Mathematics
    D1 Computer Science Applications
    Q1 Molecular Biology
    D1 Statistics and Probability
  5. Mones, L., Simon, I., Fuxreiter, M.: Metal-binding sites at the active site of restriction endonuclease BamHI can conform to a one-ion mechanism.
    Biol. Chem. 388 (1), 73-78, 2007.
    Folyóirat-mutatók:
    Q1 Biochemistry
    Q1 Clinical Biochemistry
    Q2 Molecular Biology
  6. Mones, L., Kulhánek, P., Florián, J., Simon, I., Fuxreiter, M.: Probing the two-metal ion mechanism in the restriction endonuclease BamHI.
    Biochemistry. 46 (50), 14514-14523, 2007.
    Folyóirat-mutatók:
    Q1 Biochemistry
2006
  1. Solt, I., Magyar, C., Simon, I., Tompa, P., Fuxreiter, M.: Phosphorylation-induced transient intrinsic structure in the kinase-inducible domain of CREB facilitates its recognition by the KIX domain of CBP.
    Proteins. 64 (3), 749-757, 2006.
    Folyóirat-mutatók:
    Q1 Biochemistry
    Q1 Molecular Biology
    Q2 Structural Biology
2005
  1. Fuxreiter, M., Magyar, C., Juhász, T., Szeltner, Z., Polgár, L., Simon, I.: Flexibility of prolyl oligopeptidase: molecular dynamics and molecular framework analysis of the potential substrate pathways.
    Proteins. 60 (3), 504-512, 2005.
    Folyóirat-mutatók:
    D1 Biochemistry
    Q1 Molecular Biology
    Q1 Structural Biology
  2. Fuxreiter, M., Mezei, M., Simon, I., Osman, R.: Interfacial Water as a "Hydration Fingerprint" in the Noncognate Complex of BamHI.
    Biophys. J. 89 (2), 903-911, 2005.
    Folyóirat-mutatók:
    D1 Biophysics
  3. Pingoud, A., Fuxreiter, M., Pingoud, V., Wende, W.: Type II restriction endonucleases: structure and mechanism.
    Cell. Mol. Life Sci. 62 (6), 685-707, 2005.
    Folyóirat-mutatók:
    Q1 Cell Biology
    Q1 Cellular and Molecular Neuroscience
    Q1 Molecular Biology
    D1 Molecular Medicine
    D1 Pharmacology
2004
  1. Fuxreiter, M., Osman, R., Simon, I.: Computational approaches to restriction endonucleases.
    In: The Role of Chemistry in the Evolution of Molecular Medicine : Proceedings of the symposium held at the University of Szeged to celebrate the 110th birthday of Professor Albert Szent-Györgyi 2003.06.27-2003.06.29 Magyarország, Szeged. Eds.: Imre Csizmadia, Botond Penke, Gábor Toth, Elsevier, [New York], 469-480, 2004.
  2. Tüdős, É., Fiser, A., Simon, Á., Dosztányi, Z., Fuxreiter, M., Magyar, C., Simon, I.: Noncovalent cross-links in context with other structural and functional elements of proteins.
    J. Chem. Inf. Comput. Sci. 44 (2), 347-351, 2004.
  3. Fuxreiter, M., Simon, I., Friedrich, P., Tompa, P.: Preformed structural elements feature in partner recognition by intrinsically unstructured proteins.
    J. Mol. Biol. 338 (5), 1015-1026, 2004.
    Folyóirat-mutatók:
    D1 Molecular Biology
    Q1 Structural Biology
2003
  1. Fuxreiter, M., Osman, R., Simon, I.: Computational approaches to restriction endonucleases.
    J. Mol. Struct. 666-667 469-479, 2003.
    Folyóirat-mutatók:
    Q2 Analytical Chemistry
    Q2 Inorganic Chemistry
    Q2 Organic Chemistry
    Q2 Spectroscopy
2002
  1. Fuxreiter, M., Simon, I.: Protein stability indicates divergent evolution of PD-(D/E)XK type II restriction endonucleases.
    Protein Sci. 11 (8), 1978-1983, 2002.
    Folyóirat-mutatók:
    Q1 Biochemistry
    D1 Medicine (miscellaneous)
    Q1 Molecular Biology
  2. Fuxreiter, M., Luo, N., Jedlovszky, P., Simon, I., Osman, R.: Role of base flipping in specific recognition of damaged DNA by repair enzymes.
    J. Mol. Biol. 323 (5), 823-834, 2002.
    Folyóirat-mutatók:
    D1 Molecular Biology
    Q1 Structural Biology
  3. Fuxreiter, M., Simon, I.: Role of stabilization centers in 4 helix bundle proteins.
    Proteins. 48 (2), 320-326, 2002.
    Folyóirat-mutatók:
    D1 Biochemistry
    Q1 Molecular Biology
    Q2 Structural Biology
  4. Mehler, E., Fuxreiter, M., Simon, I., B. Garcia, -.: The role of hydrophobic microenvironments in modulating pKa shifts in proteins.
    Proteins. 48 (2), 283-292, 2002.
    Folyóirat-mutatók:
    D1 Biochemistry
    Q1 Molecular Biology
    Q2 Structural Biology
2001
  1. Das, U., Chen, S., Fuxreiter, M., Vaguine, A., Richelle, J., Berman, H., Wodak, S.: Checking nucleic acid crystal structures.
    Acta Crystallogr. D Biol. Crystallogr. 57 (6), 813-828, 2001.
  2. Fuxreiter, M., Osman, R.: Probing the general base catalysis in the first step of BamHI action by computer simulations.
    Biochemistry. 40 (49), 15017-15023, 2001.
    Folyóirat-mutatók:
    D1 Biochemistry
2000
  1. Osman, R., Fuxreiter, M., Luo, N.: Specificity of damage recognition and catalysis of DNA repair.
    Comput. Chem. 24 (3-4), 331-339, 2000.
1999
  1. Martel, P., Soares, C., Baptista, A., Fuxreiter, M., Náray-Szabó, G., Louro, R., Carrondo, M.: Comparative redox and Pka calculations on cytochrome c3 from several desulfovibrio species using continuum electrostatic methods.
    J. Biol. Inorg. Chem. 4 (1), 73-86, 1999.
    Folyóirat-mutatók:
    Q1 Biochemistry
    Q1 Inorganic Chemistry
  2. Fuxreiter, M., Warshel, A., Osman, R.: Role of active site residues in the glycosylase step of T4 endonuclease V. Computer simulation studies on ionization states.
    Biochemistry. 38 (30), 9577-9589, 1999.
    Folyóirat-mutatók:
    D1 Biochemistry
1998
  1. Böcskei, Z., Náray-Szabó, G., Szabó, E., Polgár, L., Fuxreiter, M.: Crystallization and preliminary X-ray analysis of porcine muscle prolyl oligopeptidase.
    Acta Crystallogr. D Biol. Crystallogr. 54 (S2), 1414-1415, 1998.
  2. Fuxreiter, M., Warshel, A.: Origin of the catalytic power of acetylcholinesterase: computer simulation studies.
    J. Am. Chem. Soc. 120 (1), 183-194, 1998.
1997
  1. Náray-Szabó, G., Fuxreiter, M., Warshel, A.: Electrostatic basis of enzyme catalysis.
    In: Computational approaches to biochemical reactivity. Ed.: by Gábor Náray-Szabó, Arieh Warshel, Kluwer Academic Publisher, Dordrecht, 237-293, 1997. ISBN: 0792345126
  2. Szabó, A., Csámpai, A., Körmendy, K., Császár, J., Fuxreiter, M.: Highly substrate selective nucleophilic amination of nitro-substituted 4-(2-hydroxyethylamino)phthalazin-1(2h)-ones.
    Heterocycl. Commun. 3 (6), 555-562, 1997.
  3. Fuxreiter, M., Szeibert, A., Szabó, E., Dallmann, G., Náray-Szabó, G., Asboth, B., Böcskei, Z.: Role of electrostatics at the catalytic metal binding site in xylose isomerase action: Ca(2+)-inhibition and metal competence in the double mutant D254E/D256E.
    Proteins. 28 (2), 183-193, 1997.
1996
  1. Fernández, I., Ubach, J., Fuxreiter, M., Andreu, J., Andreu, D., Pons, M.: Conformation and self-association of a hybrid peptide of cecropin A and melittin with improved antibiotic activity.
    Chemistry. 2 (7), 838-846, 1996.
1995
  1. Fuxreiter, M., Farkas, Ö., Náray-Szabó, G.: Molecular modelling of xylose isomerase catalysis: the role of electrostatics and charge transfer to metals.
    Prot. Eng. 8 (9), 925-933, 1995.
1994
  1. Fuxreiter, M., Csámpai, A., Császár, J.: Formation of a strained triazapentalenoindene skeleton via the rearrangement of 2,3-dihydro-7-nitro-1H-imidazo[2,1-a]phthalazin-4-ium-6-olate effected by dichloroacetic anhydride.
    Heterocycles. 38 (7), 1453-1457, 1994.
feltöltött közlemény: 100 Open Access: 24
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