Tudóstér: Biokémiai és Molekuláris Biológiai Intézet publikációi

Arda, A., Syaifie, P., Ramadhan, D., Jauhar, M., Nugroho, D., Kaswati, N., Noviyanto, A., Safihtri, M., Rochman, N., Andrianto, D., Mardliyati, E.: Activity of propolis compounds as potential MMP1 and MMP2 inhibitors by in silico studies in wound healing application.
J. Pharm. Pharmacogn. Res. 12 (2), 264-285, 2024.

Guba, A., Kováts, P., Mezei, Z., Papp, M., Csősz, É., Kalló, G.: Analysis of Azathioprine Metabolites in Autoimmune Hepatitis Patient Blood-Method Development and Validation.
Int. J. Mol. Sci. 25 (20), 1-12, 2024.

Baráth, B., Nagy, L.: A serine metabolic enzyme is flexing its muscle to help repair skeletal muscle.
Genes Dev. 38 (3-4), 95-97, 2024.
(Ismertetett mű: Veronica Ciuffoli, Xuesong Feng, Kan Jiang, Natalia Acevedo-Luna, Kyung Dae Ko, A. Hong Jun Wang, Giulia Riparini, Mamduh Khateb, Brian Glancy, Stefania Dell'Orso, Vittorio Sartorelli. -Psat1-generated a-ketoglutarate and glutamine promote muscle stem cell activation and regeneration /In: Genes & Development. - Megjelenés alatt (2024). -)

Szeőcs, D., Vida, B., Petővári, G., Póliska, S., Janka, E., Sipos, A., Uray, K., Sebestyén, A., Krasznai, Z., Bai, P.: Cell-free ascites from ovarian cancer patients induces Warburg metabolism and cell proliferation through TGFbeta-ERK signalling.
GeroScience. 46 (4), 3581-3597, 2024.

Linkner, T., Ambrus, V., Kunkli, B., Szojka, Z., Kalló, G., Csősz, É., Kumar, A., Emri, M., Tőzsér, J., Mahdi, M.: Comparative Analysis of Differential Cellular Transcriptome and Proteome Regulation by HIV-1 and HIV-2 Pseudovirions in the Early Phase of Infection.
Int. J. Mol. Sci. 25 (1), 1-26, 2024.

Nurcholis, W., Rahmadansah, R., Astuti, P., Priosoeryanto, B., Arianti, R., Kristóf, E.: Comparative Analysis of Volatile Compounds and Biochemical Activity of Curcuma xanthorrhiza Roxb. Essential Oil Extracted from Distinct Shaded Plants.
Plants-Basel. 13 (19), 1-17, 2024.

Póliska, S., Fareh, C., Lengyel, A., Göczi, L., Tőzsér, J., Szatmári, I.: Comparative transcriptomic analysis of Illumina and MGI next-generation sequencing platforms using RUNX3- and ZBTB46-instructed embryonic stem cells.
Front. Genet. 14 1-14, 2024.

Sándor, L., Huh, J., Benkő, P., Hiraga, T., Póliska, S., Dobó Nagy, C., Simpson, J., Homer, N., Mahata, B., Győri, D.: De novo steroidogenesis in tumor cells drives bone metastasis and osteoclastogenesis.
Cell Reports. 43 (3), 1-22, 2024.

Feró, O., Szabóné, V., Nagy, É., Karányi, Z., Sipos, É., Engelhardt, J., Török, N., Balogh, I., Vető, B., Liko, I., Fóthi, Á., Szabó, Z., Halmos, G., Vécsei, L., Arányi, T., Székvölgyi, L.: DNA methylome, R-loop and clinical exome profiling of patients with sporadic amyotrophic lateral sclerosis.
Sci Data. 11 (1), 1-12, 2024.

Kiarie, I., Hoffka, G., Laporte, M., Leyssen, P., Neyts, J., Tőzsér, J., Mahdi, M.: Efficacy of Integrase Strand Transfer Inhibitors and the Capsid Inhibitor Lenacapavir against HIV-2, and Exploring the Effect of Raltegravir on the Activity of SARS-CoV-2.
Viruses-Basel. 16 (10), 1-15, 2024.

Kolostyák, Z., Bojcsuk, D., Baksa, V., Máthéné Szigeti, Z., Bene, K., Czimmerer, Z., Botó, P., Fadel, L., Póliska, S., Halász, L., Tzerpos, P., Berger, W., Villabona-Rueda, A., Varga, Z., Kovács, T., Patsalos, A., Pap, A., Vámosi, G., Bai, P., Dezső, B., Spite, M., D'Alessio,, F., Szatmári, I., Nagy, L.: EGR2 is an epigenomic regulator of phagocytosis and antifungal immunity in alveolar macrophages.
JCI Insight. 9 (17), 1-21, 2024.

Imre, L., Nánási, P., Benhamza, I., Enyedi, K., Mocsár, G., Bosire, R., Hegedűs, É., Niaki, E., Csóti, Á., Darula, Z., Csősz, É., Póliska, S., Scholtz, B., Mező, G., Bacsó, Z., Timmers, H., Kusakabe, M., Balázs, M., Vámosi, G., Ausio, J., Cheung, P., Tóth, K., Tremethick, D., Harata, M., Szabó, G.: Epigenetic modulation via the C-terminal tail of H2A.Z.
Nat Comms. 15 (1), 1-21, 2024.

Vadadokhau, U., Varga, I., Káplár, M., Emri, M., Csősz, É.: Examination of the Complex Molecular Landscape in Obesity and Type 2 Diabetes.
Int. J. Mol. Sci. 25 (9), 1-13, 2024.

Tóth, K., Ádám, D., Arany, J., Ramirez, Y., Bíró, T., Drake, J., O'Mahony, A., Szöllősi, A., Póliska, S., Kilic, A., Soeberdt, M., Abels, C., Oláh, A.: Fluoxetine exerts anti-inflammatory effects on human epidermal keratinocytes and suppresses their endothelin release.
Exp. Dermatol. 33 (1), 1-15, 2024.

Gáll, T., Pethő, D., Erdélyi, K., Egri, V., Balla, G., Nagy, A., Nagy, A., Póliska, S., Gram, M., Gábriel, R., Nagy, P., Balla, J., Balla, G.: Heme: a link between hemorrhage and retinopathy of prematurity progression.
Redox Biol. 76 1-24, 2024.

Shanmuga Sundar, S., Kannan, N., Sarang, Z., Lakshminarayanan, S., Manikandan, A., Sasikala, A., Veeranoot, N., Narendranath, J., Kamalakannan, V., Rajavelu, P., Karma, G.: In vitro study on the inflammatory response of chitosan nanoparticles as a potential siRNA carrier targeting towards osteosarcoma cells.
Z. Phys. Chemie-Int. J. Res. Phys. Chem. Chem. Phys. [Epub ahead of print]2024.

Szűcs, D., Monostori, T., Miklós, V., Páhi, Z., Póliska, S., Kemény, L., Veréb, Z.: Licensing effects of inflammatory factors and TLR ligands on the regenerative capacity of adipose-derived mesenchymal stem cells.
Front. Cell. Dev. Biol. 12 1-15, 2024.

Nagy, G., Bojcsuk, D., Tzerpos, P., Silye-Cseh, T., Nagy, L.: Lineage-determining transcription factor-driven promoters regulate cell type-specific macrophage gene expression.
Nucleic Acids Res. [Epub ahead of print]2024.

Sipka, S., Nagy, A., Nagy, J., Nokhoijav, E., Csősz, É., Baráth, S.: Measurement of chemiluminescence induced by cytochrome c plus hydrogen peroxide to characterize the peroxidase activity of various wines and the Botrytis cinerea related quality of Aszú wines of Tokaj in Hungary.
Eur. Food Res. Technol. 250 111-118, 2024.

Hoffka, G., Mhana, S., Vas, M., Toldi, V., Mótyán, J., Tőzsér, J., Szabó, A.: Modeling protease-sensitive human pancreatic lipase mutations in the mouse ortholog.
J. Biol. Chem. [Epub ahead of print]2024.

Golda, M., Hoffka, G., Cherry, S., Tropea, J., Lountos, G., Waugh, D., Wlodawer, A., Tőzsér, J., Mótyán, J.: P1' specificity of the S219V/R203G mutant tobacco etch virus protease.
Proteins. [Epub ahead of print]2024.

Tordai, C., Hathy, E., Gyergyák, H., Vincze, K., Baradits, M., Koller, J., Póti, Á., Jezsó, B., Homolya, L., Molnár, M., Nagy, L., Szüts, D., Apáti, Á., Réthelyi, J.: Probing the biological consequences of a previously undescribed de novo mutation of ZMYND11 in a schizophrenia patient by CRISPR genome editing and induced pluripotent stem cell based in vitro disease-modeling.
Schizophr. Res. [Epub ahead of print]2024.

Mótyán, J., Tőzsér, J.: Retrovírus-szerű fehérjék az emberi szervezetben.
Biokémia. 48 (1), 5-32, 2024.

Simanjuntak, M., Jauhar, M., Syaifie, P., Arda, A., Mardliyati, E., Shalannanda, W., Hermanto, B., Anshori, I.: Revealing Propolis Potential Activity on Inhibiting Estrogen Receptor and Heat Shock Protein 90 Overexpressed in Breast Cancer by Bioinformatics Approaches.
Bioinform Biol Insights. 18 1-19, 2024.

Ghani, M., Szabó, B., Alkhatibe, M., Amsalu, H., Zohar, P., Janka, E., Mótyán, J., Tar, K.: Serine 39 in the GTP-binding domain of Drp1 is involved in shaping mitochondrial morphology.
FEBS Open Bio. 14 (7), 1147-1165, 2024.

Kovács, P., Vágó, J., Takács, R., Juhász, K., Hajdú, T., Póliska, S., Szentesi, P., Matta, C.: Simulated microgravity changes the transcriptomic landscape in chondrogenic cultures.
Osteoarthritis Cartilage. 32 S336, 2024.

Patsalos, A., Halász, L., Oleksak, D., Wei, X., Nagy, G., Tzerpos, P., Conrad, T., Hammers, D., Sweeney, H., Nagy, L.: Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture.
J. Clin. Invest. 134 (20), 1-20, 2024.

Ghani, M., Zohar, P., Ujlaki, G., Tóth, M., Amsalu, H., Póliska, S., Tar, K.: Stable knockdown of Drp1 improves retinoic acid-BDNF-induced neuronal differentiation through global transcriptomic changes and results in reduced phosphorylation of ERK1/ 2 independently of DUSP1 and 6.
Front. Cell. Dev. Biol. 12 1-25, 2024.

Fehér, E., Kaszab, E., Mótyán, J., Máté, D., Bali, K., Hoitsy, M., Sós, E., Jakab, F., Bányai, K.: Structural similarity of human papillomavirus E4 and polyomaviral VP4 exhibited by genomic analysis of the common kestrel (Falco tinnunculus) polyomavirus.
Vet. Res. Commun. 48 (1), 309-315, 2024.

Laczkó, L., Jordán, S., Póliska, S., Rácz, H., Nagy, N., Molnár, V., Sramkó, G.: The draft genome of Spiraea crenata L. (Rosaceae): the frst complete genome in tribe Spiraeeae.
Sci Data. 11 (1), 1-11, 2024.

Mótyán, J., Tőzsér, J.: The human retroviral-like aspartic protease 1 (ASPRV1): from in vitro studies to clinical correlations.
J. Biol. Chem. 300 (9), 1-16, 2024.

Papp, H., Tóth, E., Bóvári-Biri, J., Bánfai, K., Juhász, P., Mahdi, M., Russo, L., Bajusz, D., Sipos, A., Petri, L., Szalai, T., Kemény, Á., Madai, M., Kuczmog, A., Batta, G., Mózner, O., Vaskó, D., Hirsch, E., Bohus, P., Méhes, G., Tőzsér, J., Curtin, N., Helyes, Z., Tóth, A., Hoch, N., Jakab, F., Keserű, G., Pongrácz, J., Bai, P.: The PARP inhibitor rucaparib blocks SARS-CoV-2 virus binding to cells and the immune reaction in models of COVID-19.
Br. J. Pharmacol. 181 (23), 4782-4803, 2024.

Arianti, R., Vinnai, B., Alrifai, R., Karadsheh, G., Qais, A., Póliska, S., Győry, F., Fésüs, L., Kristóf, E.: Upregulation of inhibitor of DNA binding 1 and 3 is important for efficient thermogenic response in human adipocytes.
Sci. Rep. 14 (1), 1-13, 2024.

Rehó, B., Fadel, L., Brázda, P., Benziane, A., Hegedűs, É., Sen, P., Gadella, T., Tóth, K., Nagy, L., Vámosi, G.: Agonist-controlled competition of RAR and VDR nuclear receptors for heterodimerization with RXR is manifested in their DNA-binding.
J. Biol. Chem. 299 (2), 1-16, 2023.

Adil Ali, M., Garabuczi, É., Tarban, N., Sarang, Z.: All-trans retinoic acid and dexamethasone regulate phagocytosis-related gene expression and enhance dead cell uptake in C2C12 myoblast cells.
Sci. Rep. 13 (1), 1-8, 2023.

Gönczi, M., Teixeira, J., Barrera-Vilarmau, S., Mediani, L., Antoniani, F., Nagy, T., Fehér, K., Ráduly, Z., Ambrus, V., Tőzsér, J., Barta, E., Kövér, K., Csernoch, L., Carra, S., Fuxreiter, M.: Alternatively spliced exon regulates context-dependent MEF2D higher-order assembly during myogenesis.
Nat Comms. 14 1329, 2023.

Alonso-Alonso, S., Vázquez, N., Chacón, M., Caballero-Sánchez, N., Del Olmo-Aguado, S., Suárez, C., Alfonso-Bartolozzi, B., Fernández-Vega-Cueto, L., Nagy, L., Merayo-Lloves, J., Meana, A.: An effective method for culturing functional human corneal endothelial cells using a xenogeneic free culture medium.
Sci. Rep. 13 (1), 1-11, 2023.

Jambrovics, K., Póliska, S., Scholtz, B., Uray, I., Balajthy, Z.: ATO Increases ROS Production and Apoptosis of Cells by Enhancing Calpain-Mediated Degradation of the Cancer Survival Protein TG2.
Int. J. Mol. Sci. 24 (13), 1-11, 2023.

Merzah, M., Póliska, S., Balogh, L., Sándor, J., Szász, I., Natae, S., Fiatal, S.: A Transcriptomic Analysis of Smoking-Induced Gene Expression Alterations in Coronary Artery Disease Patients.
Int. J. Mol. Sci. 24 (18), 1-14, 2023.

Biswas, B., Batista, F., Sundaram, S., Stanley, P.: Author Correction: MGAT1 and Complex N-Glycans Regulate ERK Signaling During Spermatogenesis.
Sci. Rep. 13 (1), 1-2, 2023.

Gruper, Y., Wolff, A., Glanz, L., Spoutil, F., Marthinussen, M., Osičková, A., Herzig, Y., Goldfarb, Y., Aranaz-Novaliches, G., Dobeš, J., Kadouri, N., Ben-Nun, O., Binyamin, A., Lavi, B., Givony, T., Khalaila, R., Gome, T., Wald, T., Mrazkova, B., Sochen, C., Besnard, M., Ben-Dor, S., Feldmesser, E., Orlova, E., Hegedűs, C., Lampé, I., Papp, T., Felszeghy, S., Sedlacek, R., Davidovich, E., Tal, N., Shouval, D., Shamir, R., Guillonneau, C., Szondy, Z., Lundin, K., Osička, R., Prochazka, J., Husebye, E., Abramson, J.: Autoimmune amelogenesis imperfecta in patients with APS-1 and coeliac disease.
Nature. 624 653-662, 2023.

Arianti, R., Vinnai, B., Győry, F., Guba, A., Csősz, É., Kristóf, E., Fésüs, L.: Availability of abundant thiamine determines efficiency of thermogenic activation in human neck area derived adipocytes.
J. Nutr. Biochem. 119 1-13, 2023.

Dull, K., Lénárt, K., Dajnoki, Z., Póliska, S., Uchiyama, E., Hendrik, Z., Szegedi, A., Töröcsik, D.: Barrier function-related genes and proteins have an altered expression in acne-involved skin.
J. Eur. Acad. Dermatol. Venereol. 37 (7), 1415-1425, 2023.

Csősz, É.: Bevezetés a proteomikába: a fehérjék korszerű vizsgálata.
Semmelweis Egyetem, Budapest, 201 p., 2023. ISBN: 9789633316009

Feró, O., Karányi, Z., Nagy, É., Mosolygó, Á., Szaker, H., Csorba, T., Székvölgyi, L.: Coding and noncoding transcriptomes of NODULIN HOMEOBOX (NDX)-deficient Arabidopsis inflorescence.
Sci Data. 10 (1), 1-12, 2023.

Nokhoijav, E., Guba, A., Vadadokhau, U., Tőzsér, J., Győri, Z., Kalló, G., Csősz, É.: Comparative Analysis of Amino Acid and Biogenic Amine Compositions of Fermented Grape Beverages.
Metabolites. 13 (8), 1-13, 2023.

Caballero-Sánchez, N., Winn, N., Rosa Neto, J., Nagy, L.: Corrigendum: Editorial: Cross-talk between heterogeneous cell types in skeletal muscle: implications for glucose metabolism.
Front Endocrinol (Lausanne). 14 1-2, 2023.

Vámos, A., Arianti, R., Vinnai, B., Alrifai, R., Shaw, A., Póliska, S., Guba, A., Csősz, É., Csomós, I., Mocsár, G., Lányi, C., Balajthy, Z., Fésüs, L., Kristóf, E.: Corrigendum: Human abdominal subcutaneous-derived active beige adipocytes carrying FTO rs1421085 obesity-risk alleles exert lower thermogenic capacity.
Front. Cell. Dev. Biol. 11 1-2, 2023.

Gellén, G., Klement, É., Biwott, K., Schlosser, G., Kalló, G., Csősz, É., Medzihradszky-Fölkl, K., Bacsó, Z.: Cross-Linking Mass Spectrometry on P-Glycoprotein.
Int. J. Mol. Sci. 24 (13), 1-24, 2023.

Rumpler, É., Göcz, B., Skrapits, K., Sárvári, M., Takács, S., Farkas, I., Póliska, S., Papp, M., Solymosi, N., Hrabovszky, E.: Development of a versatile LCM-Seq method for spatial transcriptomics of fluorescently tagged cholinergic neuron populations.
J. Biol. Chem. 299 (9), 1-13, 2023.

Caballero-Sánchez, N., Winn, N., Neto, J., Nagy, L.: Editorial: Cross-talk between heterogeneous cell types in skeletal muscle : implications for glucose metabolism.
Front Endocrinol (Lausanne). 14 1-3, 2023.

Shaw, A., Kristóf, E., Cereijo, R.: Editorial: Novel regulatory mechanisms behind thermogenesis of brown and beige adipocytes.
Front Endocrinol (Lausanne). 14 1-3, 2023.

Szűcs, D., Miklós, V., Monostori, T., Guba, M., Kun-Varga, A., Póliska, S., Kis, E., Bende, B., Kemény, L., Veréb, Z.: Effect of Inflammatory Microenvironment on the Regenerative Capacity of Adipose-Derived Mesenchymal Stem Cells.
Cells. 12 (15), 1-19, 2023.

Vinnai, B., Arianti, R., Győry, F., Bacsó, Z., Fésüs, L., Kristóf, E.: Extracellular thiamine concentration influences thermogenic competency of differentiating neck area-derived human adipocytes.
Front. Nutr. 10 1-15, 2023.

Vámos, A., Arianti, R., Vinnai, B., Alrifai, R., Shaw, A., Póliska, S., Guba, A., Csősz, É., Csomós, I., Mocsár, G., Lányi, C., Balajthy, Z., Fésüs, L., Kristóf, E.: Human Abdominal Subcutaneous-Derived Active Beige Adipocytes Carrying FTO rs1421085 Obesity-Risk Alleles Exert Lower Thermogenic Capacity.
Front. Cell. Dev. Biol. 11 1-18, 2023.

Martos, R., Tar, I., Nagy, A., Csősz, É., Kiss, C., Márton, I.: Hypercitrullination and anti-citrullinated protein antibodies in chronic apical periodontitis, a laboratory investigation. Does autoimmunity contribute to the pathogenesis?.
Int. Endod. J. 56 (5), 584-592, 2023.

Miltner, N., Kalló, G., Csősz, É., Miczi, M., Nagy, T., Mahdi, M., Mótyán, J., Tőzsér, J.: Identification of SARS-CoV-2 Main Protease (Mpro) Cleavage Sites Using Two-Dimensional Electrophoresis and In Silico Cleavage Site Prediction.
Int. J. Mol. Sci. 24 (4), 1-19, 2023.

Morales Granda, N., Toldi, V., Miczi, M., Lassoued, M., Szabó, A.: Inhibition of mouse trypsin isoforms by SPINK1 and effect of human pancreatitis-associated mutations.
Pancreatology. 23 (4), 358-366, 2023.

Takács, R., Póliska, S., Juhász, T., Barna, K., Matta, C.: Isolation of High-Quality Total RNA from Small Animal Articular Cartilage for Next-Generation Sequencing.
Current Protocols. 3 (3), 1-18, 2023.

Kotmayer, L., László, T., Mikala, G., Kiss, R., Lévay, L., Hegyi, L., Gróf, S., Nagy, T., Barna, G., Farkas, P., Weisinger, J., Nagy, Z., Balogh, A., Masszi, T., Demeter, J., Sulák, A., Kohl, Z., Alizadeh, H., Egyed, M., Pettendi, P., Gergely, L., Plander, M., Pauker, Z., Masszi, A., Matolcsy, A., Szász, R., Bödör, C., Alpár, D.: Landscape of BCL2 Resistance Mutations in a Real-World Cohort of Patients with Relapsed/Refractory Chronic Lymphocytic Leukemia Treated with Venetoclax.
Int. J. Mol. Sci. 24 (6), 1-15, 2023.

Kovács, D., Camera, E., Póliska, S., Cavallo, A., Maiellaro, M., Dull, K., Gruber, F., Zouboulis, C., Szegedi, A., Töröcsik, D.: Linoleic Acid Induced Changes in SZ95 Sebocytes-Comparison with Palmitic Acid and Arachidonic Acid.
Nutrients. 15 (15), 1-20, 2023.

Tarban, N., Papp, A., Deák, D., Szentesi, P., Halász, H., Patsalos, A., Csernoch, L., Sarang, Z., Szondy, Z.: Loss of adenosine A3 receptors accelerates skeletal muscle regeneration in mice following cardiotoxin-induced injury.
Cell Death Dis. 14 (10), 706, 2023.

Mittli, D., Tukacs, V., Ravasz, L., Csősz, É., Kozma, T., Kardos, J., Juhász, G., Kékesi, K.: LPS-induced acute neuroinflammation, involving interleukin-1 beta signaling, leads to proteomic, cellular, and network-level changes in the prefrontal cortex of mice.
Brain, Behavior, & Immunity - Health. 28 1-15, 2023.

Dániel, B., Belk, J., Meier, S., Chen, A., Sándor, K., Czimmerer, Z., Varga, Z., Bene, K., Buquicchio, F., Qi, Y., Kitano, H., Wheeler, J., Foster, D., Januszyk, M., Longaker, M., Chang, H., Satpathy, A.: Macrophage inflammatory and regenerative response periodicity is programmed by cell cycle and chromatin state.
Mol. Cell. 83 (1), 121-138, 2023.

Chang Chien, Y., Madarász, K., Csoma, S., Mótyán, J., Huang, H., Méhes, G., Mokánszki, A.: Molecular Identification and In Silico Protein Analysis of a Novel BCOR-CLGN Gene Fusion in Intrathoracic BCOR-Rearranged Sarcoma.
Cancers (Basel). 15 (3), 1-17, 2023.

Bedics, G., Szőke, P., Bátai, B., Nagy, T., Papp, G., Kránitz, N., Rajnai, H., Reiniger, L., Bödör, C., Scheich, B.: Novel, clinically relevant genomic patterns identified by comprehensive genomic profiling in ATRX-deficient IDH-wildtype adult high-grade gliomas.
Sci. Rep. 13 (1), 1-12, 2023.

Cereijo, R., Kristóf, E.: Novel regulatory mechanisms behind thermogenesis of brown and beige adipocytes.
Frontiers Media, Lausanne, 139 p., 2023. ISBN: 9782832534007

Garabuczi, É., Tarban, N., Vincze-Fige, É., Patsalos, A., Halász, L., Szendi-Szatmári, T., Sarang, Z., Király, R., Szondy, Z.: Nur77 and PPARγ regulate transcription and polarization in distinct subsets of M2-like reparative macrophages during regenerative inflammation.
Front. Immunol. 14 1-14, 2023.

Bodnár, V., Pákozdi, K., Király, A., Póliska, S., Antal, K., Leiter, É., Pócsi, I., Emri, T.: Osmotic stress elicited gene expression changes in aspergillus wentii wildtype and 'c gfdb and aspergillus nidulans wild-type and gfdb mutant strains.
Acta Microbiol. Immunol. Hung. 70 (Supplement-1), 58, 2023.

Jankó, L., Tóth, E., Laczik, M., Rauch, B., Janka, E., Bálint, B., Bai, P.: PARP2 poly(ADP-ribosyl)ates nuclear factor erythroid 2-related factor 2 (NRF2) affecting NRF2 subcellular localization.
Sci. Rep. 13 (7869), 1-13, 2023.

Antal, D., Pór, Á., Kovács, I., Dull, K., Póliska, S., Ujlaki, G., Demény, M., Szöllősi, A., Kiss, B., Szegedi, A., Bai, P., Szántó, M.: PARP2 promotes inflammation in psoriasis by modulating estradiol biosynthesis in keratinocytes.
J. Mol. Med. (Berl). 101 (8), 987-999, 2023.

Antal, D., Pór, Á., Kovács, I., Dull, K., Póliska, S., Ujlaki, G., Demény, M., Szöllősi, A., Kiss, B., Szegedi, A., Bai, P., Szántó, M.: PARP2 promotes inflammation in sporiasis by modulating estradiol biosynthesis in keratinocytes.
In: FEBS Advanced Lecture Course: PARP 2023: Research on the family of poly(ADP-ribose) polymerases; Book of Abstracts. Ed.: Andreja Mikoc, Ivan Matic, Ruder Boskovic Institue, Hvar, 60, 2023. ISBN: 9789537941468

Imre, G., Takács, B., Czipa, E., Drubi, A., Jaksa, G., Latinovics, D., Nagy, A., Karkas, R., Hudoba, L., Vásárhelyi, B., Pankotai-Bodó, G., Blastyák, A., Hegedűs, Z., Germán, P., Bálint, B., Ahmed Abdullah, K., Kopasz, A., Kovács, A., Nagy, L., Sükösd, F., Pintér, L., Rülicke, T., Barta, E., Nagy, I., Haracska, L., Mátés, L.: Prolonged activity of the transposase helper may raise safety concerns during DNA transposon-based gene therapy.
Molecular Therapy - Methods & Clinical Development. 29 145-159, 2023.

Ghaffarinia, A., Ayaydin, F., Póliska, S., Manczinger, M., Bolla, B., Flink, L., Balogh, F., Veréb, Z., Bozó, R., Szabó, K., Bata-Csörgő, Z., Kemény, L.: Psoriatic Resolved Skin Epidermal Keratinocytes Retain Disease-Residual Transcriptomic and Epigenomic Profiles.
Int. J. Mol. Sci. 24 (5), 1-20, 2023.

Kalló, G., Bertalan, P., Márton, I., Kiss, C., Csősz, É.: Salivary Chemical Barrier Proteins in Oral Squamous Cell Carcinoma-Alterations in the Defense Mechanism of the Oral Cavity.
Int. J. Mol. Sci. 24 (17), 1-20, 2023.

Hoffka, G., Lountos, G., Needle, D., Wlodawer, A., Waugh, D., Tőzsér, J., Mótyán, J.: Self-inhibited state of Venezuelan equine encephalitis virus (VEEV) nsP2 cysteine protease: a crystallographic and molecular dynamics analysis.
J. Mol. Biol. 435 (6), 1-20, 2023.

Huang, Z., Gu, C., Zhang, Z., Arianti, R., Swaminathan, A., Tran, K., Battist, A., Kristóf, E., Ruan, H.: Supraclavicular brown adipocytes originate from Tbx1+ myoprogenitors.
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Guba, A., Bába, O., Tőzsér, J., Csősz, É., Kalló, G.: Fast and Sensitive Quantification of AccQ-Tag Derivatized Amino Acids and Biogenic Amines by UHPLC-UV Analysis from Complex Biological Samples.
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Vámos, A., Shaw, A., Varga, K., Csomós, I., Mocsár, G., Balajthy, Z., Lányi, C., Bacsó, Z., Szatmári-Tóth, M., Kristóf, E.: Mitophagy Mediates the Beige to White Transition of Human Primary Subcutaneous Adipocytes Ex Vivo.
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Mahdi, M., Hermán, L., Réthelyi, J., Bálint, B.: Potential Role of the Antidepressants Fluoxetine and Fluvoxamine in the Treatment of COVID-19.
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Kupai, K., Várkonyi, T., Török, S., Gáti, V., Czimmerer, Z., Puskás, L., Szebeni, G.: Recent Progress in the Diagnosis and Management of Type 2 Diabetes Mellitus in the Era of COVID-19 and Single Cell Multi-Omics Technologies.
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Tarban, N., Halász, H., Gogolák, P., Garabuczi, É., Moise, A., Palczewski, K., Sarang, Z., Szondy, Z.: Regenerating Skeletal Muscle Compensates for the Impaired Macrophage Functions Leading to Normal Muscle Repair in Retinol Saturase Null Mice.
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Vincze-Fige, É., Sarang, Z., Sós, L., Szondy, Z.: Retinoids Promote Mouse Bone Marrow-Derived Macrophage Differentiation and Efferocytosis via Upregulating Bone Morphogenetic Protein-2 and Smad3.
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Scholtz, B., Horváth, J., Tar, I., Kiss, C., Márton, I.: Salivary miR-31-5p, miR-345-3p, and miR-424-3p Are Reliable Biomarkers in Patients with Oral Squamous Cell Carcinoma.
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Tóth, A., Székvölgyi, L., Vellai, T.: The genome loading model for the origin and maintenance of sex in eukaryotes.
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Jdeed, S., Erdős, E., Bálint, B., Uray, I.: The Role of ARID1A in the Nonestrogenic Modulation of IGF-1 Signaling.
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Kassay, N., Mótyán, J., Matúz, K., Golda, M., Tőzsér, J.: Biochemical Characterization, Specificity and Inhibition Studies of HTLV-1, HTLV-2, and HTLV-3 Proteases.
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Shaw, A., Bartáné Tóth, B., Arianti, R., Csomós, I., Póliska, S., Vámos, A., Bacsó, Z., Győry, F., Fésüs, L., Kristóf, E.: BMP7 increases UCP1-dependent and independent thermogenesis with a unique gene expression program in human neck area derived adipocytes.
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Kovács, E., Alatshan, A., Budai, M., Czimmerer, Z., Bíró, E., Benkő, S.: Caffeine Has Different Immunomodulatory Effect on the Cytokine Expression and NLRP3 Inflammasome Function in Various Human Macrophage Subpopulations.
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Kumar, A., Doan-Xuan, Q., Kunkli, B., Csősz, É.: Construction of unified human antimicrobial and immunomodulatory peptide database and examination of antimicrobial and immunomodulatory peptides in Alzheimer's disease using network analysis of proteomics datasets.
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Miczi, M., Diós, Á., Bozóki, B., Tőzsér, J., Mótyán, J.: Development of a Bio-Layer Interferometry-Based Protease Assay Using HIV-1 Protease as a Model.
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Nagy, N., Rácz, R., Rimington, O., Póliska, S., Orozco-terWengel, P., Bruford, M., Barta, Z.: Draft genome of a biparental beetle species, Lethrus apterus.
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Tóth, F., Tőzsér, J., Hegedűs, C.: Effect of Inducible BMP-7 Expression on the Osteogenic Differentiation of Human Dental Pulp Stem Cells.
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Vincze-Fige, É., Szendrei, J., Sós, L., Kraszewska, I., Potor, L., Balla, J., Szondy, Z.: Heme Oxygenase-1 Contributes to Both the Engulfment and the Anti-Inflammatory Program of Macrophages during Efferocytosis.
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Gargya, P., Bálint, B.: Histological Grade of Endometrioid Endometrial Cancer and Relapse Risk Can Be Predicted with Machine Learning from Gene Expression Data.
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Kenesei, Á., Volkó, J., Szalóki, N., Mocsár, G., Jambrovics, K., Balajthy, Z., Dóczy-Bodnár, A., Tóth, K., Waldmann, T., Vámosi, G.: IL-15 Trans-Presentation Is an Autonomous, Antigen-Independent Process.
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Budai, Z., Al Zaeed, N., Szentesi, P., Halász, H., Csernoch, L., Szondy, Z., Sarang, Z.: Impaired Skeletal Muscle Development and Regeneration in Transglutaminase 2 Knockout Mice.
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Virok, D., Tömösi, F., Keller-Pintér, A., Szabó, K., Bogdanov, A., Póliska, S., Rázga, Z., Bruszel, B., Cseh, Z., Kókai, D., Paróczai, D., Endresz, V., Janáky, T., Burián, K.: Indoleamine 2,3-Dioxygenase Cannot Inhibit Chlamydia trachomatis Growth in HL-60 Human Neutrophil Granulocytes.
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Arianti, R., Ariani, N., Muhammad, A., Sadewa, A., Farmawati, A., Sunarti, Hastuti, P., Kristóf, E.: Influence of Single Nucleotide Polymorphism of ENPP1 and ADIPOQ on Insulin Resistance and Obesity: a Case-Control Study in a Javanese Population.
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Shaw, A., Szatmári-Tóth, M., Csomós, I., Mocsár, G., Balajthy, Z., Győry, F., Kristóf, E., Fésüs, L.: Mitophagy is downregulated upon thermogenic stimulus in human beige adipocytes.
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Türk-Mázló, A., Kovács, R., Miltner, N., Tóth, M., Veréb, Z., Szabó, K., Bacskai, I., Pázmándi, K., Apáti, Á., Bíró, T., Bene, K., Rajnavölgyi, É., Bácsi, A.: MSC-like cells increase ability of monocyte-derived dendritic cells to polarize IL-17-/IL-10-producing T cells via CTLA-4.
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Mokánszki, A., Chang Chien, Y., Mótyán, J., Juhász, P., Bádon, E., Madar, L., Szegedi, I., Kiss, C., Méhes, G.: Novel RB1 and MET Gene Mutations in a Case with Bilateral Retinoblastoma Followed by Multiple Metastatic Osteosarcoma.
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Gazsi, G., Czimmerer, Z., Ivanovics, B., Berta, I., Urbányi, B., Csenki-Bakos, Z., Ács, A.: Physiological, Developmental, and Biomarker Responses of Zebrafish Embryos to Sub-Lethal Exposure of Bendiocarb.
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Jankó, L., Kovács, T., Laczik, M., Sári, Z., Ujlaki, G., Kis, G., Horváth, I., Antal, M., Vígh, L., Bálint, B., Uray, K., Bai, P.: Silencing of Poly(ADP-Ribose) Polymerase-2 Induces Mitochondrial Reactive Species Production and Mitochondrial Fragmentation.
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Mótyán, J., Miczi, M., Oroszlan, S., Tőzsér, J.: Specificity of the HIV-1 Protease on Substrates Representing the Cleavage Site in the Proximal Zinc-Finger of HIV-1 Nucleocapsid Protein.
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Borbély, A., Pethő, L., Szabó, I., Al-Majidi, M., Steckel, A., Nagy, T., Kéki, S., Kalló, G., Csősz, É., Mező, G., Schlosser, G.: Structural Characterization of Daunomycin-Peptide Conjugates by Various Tandem Mass Spectrometric Techniques.
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Révész, Á., Milley, M., Nagy, K., Szabó, D., Kalló, G., Csősz, É., Vékey, K., Drahos, L.: Tailoring to Search Engines: bottom-Up Proteomics with Collision Energies Optimized for Identification Confidence.
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Al Zaeed, N., Budai, Z., Szondy, Z., Sarang, Z.: TAM kinase signaling is indispensable for proper skeletal muscle regeneration in mice.
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Mustachio, L., Chelariu-Raicu, A., Székvölgyi, L., Roszik, J.: Targeting KRAS in Cancer: promising Therapeutic Strategies.
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Skrapits, K., Sárvári, M., Farkas, I., Göcz, B., Takács, S., Rumpler, É., Váczi, V., Vastagh, C., Rácz, G., Matolcsy, A., Solymosi, N., Póliska, S., Tóth, B., Erdélyi, F., Szabó, G., Culler, M., Allet, C., Cotellessa, L., Prévot, V., Giacobini, P., Hrabovszky, E.: The cryptic gonadotropin-releasing hormone neuronal system of human basal ganglia.
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Szabó, K., Miskei, M., Farkas, I., Dombrádi, V.: The phosphatome of opportunistic pathogen Candida species.
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Matta, C., Lewis, R., Fellows, C., Diszházi, G., Almássy, J., Miosge, N., Dixon, J., Uribe, M., May, S., Póliska, S., Barrett-Jolley, R., Fodor, J., Szentesi, P., Hajdú, T., Keller-Pintér, A., Henslee, E., Labeed, F., Hughes, M., Mobasheri, A.: Transcriptome-based screening of ion channels and transporters in a migratory chondroprogenitor cell line isolated from late-stage osteoarthritic cartilage.
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Szabó, Z., Hornyák, L., Miskei, M., Székvölgyi, L.: Two targets, one hit: new anticancer therapeutics to prevent tumorigenesis without cardiotoxicity.
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Botó, P., Gerzsenyi, T., Lengyel, A., Szúnyog, B., Szatmári, I.: Zbtb46-dependent altered developmental program in embryonic stem cell-derived blood cell progenitors.
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Gurwitz, K., Singh Gaur, P., Bellis, L., Larcombe, L., Alloza, E., Bálint, B., Botzki, A., Dimec, J., Dominguez del Angel, V., Fernandes, P., Korpelainen, E., Krause, R., Kuzak, M., Le Pera, L., Leskošek, B., Lindvall, J., Marek, D., Martinez, P., Muyldermans, T., Nygård, S., Palagi, P., Peterson, H., Psomopoulos, F., Spiwok, V., van Gelder, C., Via, A., Vidak, M., Wibberg, D., Morgan, S., Rustici, G.: A framework to assess the quality and impact of bioinformatics training across ELIXIR.
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Fadel, L., Rehó, B., Volkó, J., Bojcsuk, D., Kolostyák, Z., Nagy, G., Müller, G., Simándi, Z., Hegedűs, É., Szabó, G., Tóth, K., Nagy, L., Vámosi, G.: Agonist binding directs dynamic competition among nuclear receptors for heterodimerization with retinoid X receptor.
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Alatshan, A., Kovács, G., Aladdin, A., Czimmerer, Z., Tar, K., Benkő, S.: All-Trans Retinoic Acid Enhances both the Signaling for Priming and the Glycolysis for Activation of NLRP3 Inflammasome in Human Macrophage.
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Mokánszki, A., Molnár, Z., Tóthné Varga, E., Bodnár, B., Jakab, A., Bálint, B., Balogh, I.: Altered microRNAs expression levels of sperm and seminal plasma in patients with infertile ejaculates compared with normozoospermic males.
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Bojcsuk, D., Nagy, G., Bálint, B.: Alternatively Constructed Estrogen Receptor Alpha-Driven Super-Enhancers Result in Similar Gene Expression in Breast and Endometrial Cell Lines.
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Mahdi, M., Mótyán, J., Szojka, Z., Golda, M., Miczi, M., Tőzsér, J.: Analysis of the efficacy of HIV protease inhibitors against SARS-CoV-2·s main protease.
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Székvölgyi, L.: A stresszválasz biokémiája.

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Majai, G., Gogolák, P., Tóth, M., Hodrea, J., Horváth, D., Fésüs, L., Rajnavölgyi, É., Bácsi, A.: Autologous apoptotic neutrophils inhibit inflammatory cytokine secretion by human dendritic cells, but enhance Th1 responses.
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Jambrovics, K., Uray, I., Keillor, J., Fésüs, L., Balajthy, Z.: Benefits of Combined All-Trans Retinoic Acid and Arsenic Trioxide Treatment of Acute Promyelocytic Leukemia Cells and Further Enhancement by Inhibition of Atypically Expressed Transglutaminase 2.
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Bálint, B., Scholtz, B.: Bioinformatika-oktatás élettudományi hallgatók részére a Galaxy-platform segítségével = Teaching Bioinformatics for Students of Life Science on the Galaxy Platform.
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Czipa, E., Schiller, M., Nagy, T., Kontra, L., Steiner, L., Koller, J., Pálné, S., Barta, E.: ChIPSummitDB: a ChIP-seq based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them.
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Fuxreiter, M.: Classifying the Binding Modes of Disordered Proteins.
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Kalló, G., Kunkli, B., Győri, Z., Szilvássy, Z., Csősz, É., Tőzsér, J.: Compounds with Antiviral, Anti-Inflammatory and Anticancer Activity Identified in Wine from Hungary's Tokaj Region via High Resolution Mass Spectrometry and Bioinformatics Analyses.
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Molnár-Fodor, K., Sipos, É., Dobos, N., Nagy, J., Steiber, Z., Méhes, G., Dull, K., Székvölgyi, L., Schally, A., Halmos, G.: Correlation between the Expression of Angiogenic Factors and Stem Cell Markers in Human Uveal Melanoma.
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Mótyán, J., Miczi, M., Tőzsér, J.: Dimer Interface Organization is a Main Determinant of Intermonomeric Interactions and Correlates with Evolutionary Relationships of Retroviral and Retroviral-Like Ddi1 and Ddi2 Proteases.
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Bálint, B.: Embracing Noise and Error.
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Scholtz, B., Vo Minh, D., Kiss, C., Tar, I., Kumar, A., Tőzsér, J., Csősz, É., Márton, I.: Examination of Oral Squamous Cell Carcinoma and Precancerous Lesions Using Proximity Extension Assay and Salivary RNA Quantification.
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Divoux, A., Sándor, K., Bojcsuk, D., Yi, F., Hopf, M., Smith, J., Bálint, B., Osborne, T., Smith, S.: Fat Distribution in Women Is Associated With Depot-Specific Transcriptomic Signatures and Chromatin Structure.
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Józsa, L., Ujhelyi, Z., Vasvári, G., Sinka, D., Nemes, D., Fenyvesi, F., Váradi, J., Vecsernyés, M., Szabó, J., Kalló, G., Vasas, G., Bácskay, I., Fehér, P.: Formulation of Creams Containing Spirulina Platensis Powder with Different Nonionic Surfactants for the Treatment of Acne Vulgaris.
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Bartáné Tóth, B., Arianti, R., Shaw, A., Vámos, A., Veréb, Z., Póliska, S., Győry, F., Bacsó, Z., Fésüs, L., Kristóf, E.: FTO intronic SNP strongly influences human neck adipocyte browning determined by tissue and PPARγ specific regulation: a transcriptome analysis.
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Fuxreiter, M.: Fuzzy protein theory for disordered proteins.
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Posta, N., Csősz, É., Oros, M., Pethő, D., Potor, L., Kalló, G., Hendrik, Z., Sikura, K., Méhes, G., Tóth, C., Posta, J., Balla, G., Balla, J.: Hemoglobin oxidation generates globin-derived peptides in atherosclerotic lesions and intraventricular hemorrhage of the brain, provoking endothelial dysfunction.
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Karányi, Z., Hornyák, L., Székvölgyi, L.: Histone H3 lysine 56 acetylation is required for formation of normal levels of meiotic DNA breaks in S. cerevisiae.
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Miczi, M., Golda, M., Kunkli, B., Nagy, T., Tőzsér, J., Mótyán, J.: Identification of Host Cellular Protein Substrates of SARS-COV-2 Main Protease.
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Toldi, V., Szabó, A., Sahin-Tóth, M.: Inactivation of mesotrypsin by chymotrypsin C prevents trypsin inhibitor degradation.
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Hathy, E., Szabó, E., Varga, N., Erdei, Z., Tordai, C., Czehlár, B., Baradits, M., Jezsó, B., Koller, J., Nagy, L., Molnár, M., Homolya, L., Nemoda, Z., Apáti, Á., Réthelyi, J.: Investigation of de novo mutations in a schizophrenia case-parent trio by induced pluripotent stem cell-based in vitro disease modeling: convergence of schizophrenia- and autism-related cellular phenotypes.
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Kovács, D., Dull, K., Szegedi, A., Deák, D., Póliska, S., Rühl, R., Zouboulis, C., Töröcsik, D.: Isotretinoin is indirectly effective in sebocytes.
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Gyenes, D., Budai, Z., Sarang, Z.: Magas intenzitású intervallum edzés hatásainak vizsgálata.
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Frank, K., Bana, N., Bleier, N., Sugár, L., Nagy, J., Wilhelm, J., Kálmán, Z., Barta, E., Orosz, L., Horn, P., Stéger, V.: Mining the red deer genome (CerEla1.0) to develop X-and Y-chromosome-linked STR markers.
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Nagy, G., Nagy, L.: Motif grammar: the basis of the language of gene expression.
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Sansbury, B., Li, X., Wong, B., Patsalos, A., Giannakis, N., Zhang, M., Nagy, L., Spite, M.: Myeloid ALX/FPR2 regulates vascularization following tissue injury.
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Erdős, E., Bálint, B.: NR2F2 Orphan Nuclear Receptor is Involved in Estrogen Receptor Alpha-Mediated Transcriptional Regulation in Luminal-A Breast Cancer Cells.
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Szilágyi, B., Fejes, Z., Póliska, S., Pócsi, M., Czimmerer, Z., Patsalos, A., Fenyvesi, F., Rusznyák, Á., Nagy, G., Kerekes, G., Berhés, M., Szűcs, I., Kunapuli, S., Kappelmayer, J., Nagy, B.: Reduced miR-26b Expression in Megakaryocytes and Platelets Contributes to Elevated Level of Platelet Activation Status in Sepsis.
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Ulukan, B., Bihorac, A., Sipahioglu, T., Király, R., Fésüs, L., Telci, D.: Role of Tissue Transglutaminase Catalytic and Guanosine Triphosphate-Binding Domains in Renal Cell Carcinoma Progression.
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Retzlerné Medgyesi, B., Dajnoki, Z., Béke, G., Gáspár, K., Szabó, I., Janka, E., Póliska, S., Hendrik, Z., Méhes, G., Töröcsik, D., Bíró, T., Kapitány, A., Szegedi, A.: Rosacea is Characterized by a Profoundly Diminished Skin Barrier.
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Weiss, K., Garcia, A., Marosvölgyi, T., Szklenár, M., Decsi, T., Rühl, R.: Saturated and monounsaturated fatty acids in membranes are determined by the gene expression of their metabolizing enzymes SCD1 and ELOVL6 regulated by the intake of dietary fat.
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Miskei, M., Horváth, A., Vendruscolo, M., Fuxreiter, M.: Sequence-Based Prediction of Fuzzy Protein Interactions.
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Selbmann, L., Benkő, Z., Coleine, C., de Hoog, S., Donati, C., Druzhinina, I., Emri, T., Ettinger, C., Gladfelter, A., Gorbushina, A., Grigoriev, I., Grube, M., Gunde-Cimerman, N., Karányi, Z., Kocsis, B., Kubressoian, T., Miklós, I., Miskei, M., Muggia, L., Northen, T., Novak-Babič, M., Pennacchio, C., Pfliegler, V., Pócsi, I., Prigione, V., Riquelme, M., Segata, N., Schumacher, J., Shelest, E., Sterflinger, K., Tesei, D., U'Ren, J., Varese, G., Vázquez-Campos, X., Vicente, V., Souza, E., Zalar, P., Walker, A., Stajich, J.: Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES.
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Rehó, B., Lau, L., Mocsár, G., Müller, G., Fadel, L., Brázda, P., Nagy, L., Tóth, K., Vámosi, G.: Simultaneous Mapping of Molecular Proximity and Comobility Reveals Agonist-Enhanced Dimerization and DNA Binding of Nuclear Receptors.
Anal. Chem. 92 (2), 2207-2215, 2020.

Csumita, M., Csermely, A., Horváth, A., Nagy, G., Monori, F., Göczi, L., Orbea, H., Reith, W., Széles, L.: Specific enhancer selection by IRF3, IRF5 and IRF9 is determined by ISRE half-sites, 5' and 3' flanking bases, collaborating transcription factors and the chromatin environment in a combinatorial fashion.
Nucleic Acids Res. 48 (2), 589-604, 2020.

Bozóki, B., Mótyán, J., Hoffka, G., Waugh, D., Tőzsér, J.: Specificity Studies of the Venezuelan Equine Encephalitis Virus Non-Structural Protein 2 Protease Using Recombinant Fluorescent Substrates.
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Golda, M., Mótyán, J., Mahdi, M., Tőzsér, J.: Study of the Retrotransposon-Derived Human PEG10 Protease.
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Douida, A., Batista, F., Robaszkiewicz, A., Botó, P., Aladdin, A., Szenykiv, M., Czinege, R., Virág, L., Tar, K.: The proteasome activator PA200 regulates expression of genes involved in cell survival upon selective mitochondrial inhibition in neuroblastoma cells.
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Szatmári-Tóth, M., Shaw, A., Csomós, I., Mocsár, G., Fischer-Posovszky, P., Wabitsch, M., Balajthy, Z., Lányi, C., Győry, F., Kristóf, E., Fésüs, L.: Thermogenic Activation Downregulates High Mitophagy Rate in Human Masked and Mature Beige Adipocytes.
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Molnár-Fodor, K., Dobos, N., Schally, A., Steiber, Z., Oláh, G., Sipos, É., Székvölgyi, L., Halmos, G.: The targeted LHRH analog AEZS-108 alters expression of genes related to angiogenesis and development of metastasis in uveal melanoma.
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Dániel, B., Czimmerer, Z., Halász, L., Botó, P., Kolostyák, Z., Póliska, S., Berger, W., Tzerpos, P., Nagy, G., Horváth, A., Hajas, G., Silye-Cseh, T., Nagy, A., Sauer, S., Francois-Deleuze, J., Szatmári, I., Bácsi, A., Nagy, L.: The transcription factor EGR2 is the molecular linchpin connecting STAT6 activation to the late, stable epigenomic program of alternative macrophage polarization.
Genes Dev. 34 (21-22), 1474-1492, 2020.

Lénárt, K., Pap, A., Pórszász, R., Oláh, A., Fésüs, L., Mádi, A.: Transglutaminase 2 Has Metabolic and Vascular Regulatory Functions Revealed by In Vivo Activation of Alpha1-Adrenergic Receptor.
Int. J. Mol. Sci. 21 (11), 1-18, 2020.

Czimmerer, Z., Halász, L., Nagy, L.: Unorthodox Transcriptional Mechanisms of Lipid-Sensing Nuclear Receptors in Macrophages: are We Opening a New Chapter?.
Front Endocrinol (Lausanne). 11 1-13, 2020.

Nagy, G., Dániel, B., Cuaranta-Monroy, I., Nagy, L.: Unraveling the Hierarchy of cis and trans Factors That Determine the DNA Binding by Peroxisome Proliferator-Activated Receptor γ.
Mol. Cell. Biol. 40 (7), 1-20, 2020.

Gyenes, D., Budai, Z., Sarang, Z.: Vázizomsérülés kezelések jelenlegi módjainak áttekintése.
Stadium. 3 (1), 1-18, 2020.

Veréb, Z., Türk-Mázló, A., Szabó, A., Póliska, S., Kiss, A., Litauszky, K., Koncz, G., Boda, Z., Rajnavölgyi, É., Bácsi, A.: Vessel Wall-Derived Mesenchymal Stromal Cells Share Similar Differentiation Potential and Immunomodulatory Properties with Bone Marrow-Derived Stromal Cells.
Stem Cells International. 2020 1-16, 2020.

Lucas, R., Mihály, J., Gericke, J., Töröcsik, D., Rühl, R.: Vitamin D signaling in a mouse allergic sensitization model.
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Hardenberg, M., Horváth, A., Ambrus, V., Fuxreiter, M., Vendruscolo, M.: Widespread occurrence of the droplet state of proteins in the human proteome.
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Szojka, Z., Mótyán, J., Miczi, M., Mahdi, M., Tőzsér, J.: Y44A Mutation in the Acidic Domain of HIV-2 Tat Impairs Viral Reverse Transcription and LTR-Transactivation.
Int. J. Mol. Sci. 21 (16), 1-17, 2020.

Bánfai, K., Ernszt, D., Pap, A., Bai, P., Garai, K., Belharazem, D., Pongrácz, J., Kvell, K.: "Beige" cross talk between the immune system and metabolism.
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Tüű-Szabó, B., Hoffka, G., Duró, N., Fuxreiter, M.: Altered dynamics may drift pathological fibrillization in membraneless organelles.
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Kerekes, V., Ozogány, K., Sándor, I., Végvári, Z., Czető, C., Nyírő, B., Szabados, T., Széles, L., Barta, Z.: Analysis of habitat use, activity, and body condition scores of Przewalski's horses in Hortobagy National Park, Hungary.
Nat. Conserv. Res. 4 (Suppl.), 31-40, 2019.

Csősz, É., Tóth, F., Mahdi, M., Tsaprailis, G., Emri, M., Tőzsér, J.: Analysis of networks of host proteins in the early time points following HIV transduction.
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Aydemir, G., Domínguez, M., de Lera, Á., Mihály, J., Töröcsik, D., Rühl, R.: Apo-14'-Carotenoic Acid Is a Novel Endogenous and Bioactive Apo-Carotenoid.
Nutrients. 11 (9), 1-11, 2019.

Penyige, A., Márton, É., Soltész, B., Szilágyi, M., Póka, R., Lukács, J., Széles, L., Nagy, B.: Circulating miRNA Profiling in Plasma Samples of Ovarian Cancer Patients.
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Bojcsuk, D., Bálint, B.: Classification of different types of estrogen receptor alpha binding sites in MCF-7 cells.
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Moreira, T., Horta, L., Gomes-Santos, A., Oliveira, R., Queiroz, N., Mangani, D., Dániel, B., Vieira, A., Liu, S., Rodrigues, A., Gomes, D., Gabriely, G., Ferreira, E., Weiner, H., Rezende, R., Nagy, L., Faria, A.: CLA-supplemented diet accelerates experimental colorectal cancer by inducing TGF-β-producing macrophages and T cells.
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Josifovska, N., Lumi, X., Szatmári-Tóth, M., Kristóf, E., Russell, G., Nagymihály, R., Anisimova, N., Malyugin, B., Kolko, M., Ivastinović, D., Petrovski, G.: Clinical and molecular markers in retinal detachment: From hyperreflective points to stem cells and inflammation.
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Gyurina, K., Kárai, B., Ujfalusi, A., Hevessy, Z., Barna, G., Jáksó, P., Pálfi-Mészáros, G., Póliska, S., Scholtz, B., Kappelmayer, J., Zahuczky, G., Kiss, C.: Coagulation FXIII-A protein expression defines three novel sub-populations in pediatric B-cell progenitor acute lymphoblastic leukemia characterized by distinct gene expression signatures.
Front Oncol. 9 1-14, 2019.

Csősz, É., Deák, E., Tóth, N., Traverso, C., Csutak, A., Tőzsér, J.: Comparative analysis of cytokine profiles of glaucomatous tears and aqueous humour reveals potential biomarkers for trabeculectomy complications.
FEBS Open Bio. 9 (5), 1020-1028, 2019.

Halász, L., Karányi, Z., Boros-Oláh, B., Kuik-Rózsa, T., Sipos, É., Nagy, É., Mosolygó, Á., Türk-Mázló, A., Rajnavölgyi, É., Halmos, G., Székvölgyi, L.: Corrigendum: RNA-DNA hybrid (R-loop) immunoprecipitation mapping: an analytical workflow to evaluate inherent biases.
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Erdős, E., Bálint, B.: COUP-TFII is a modulator of cell-type-specific genetic programs based on genomic localization maps.
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Karlsson, I., Tingstedt, J., Şahin, G., Hansen, M., Szojka, Z., Buggert, M., Biague, A., da Silva, Z., Månsson, F., Esbjörnsson, J., Norrgren, H., Medstrand, P., Fomsgaard, A., Jansson, M., Sweden-Guinea-Bissau Cohort Research Group: Cross-Reactive Antibodies With the Capacity to Mediate HIV-1 Envelope Glycoprotein-Targeted Antibody-Dependent Cellular Cytotoxicity Identified in HIV-2-Infected Individuals.
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Diszházi, G., Magyar, Z., Mótyán, J., Csernoch, L., Jóna, I., Nánási, P., Almássy, J.: Dantrolene Requires Mg2+ and ATP To Inhibit the Ryanodine Receptor.
Mol. Pharmacol. 96 (3), 401-407, 2019.

Szabó, K., Jakab, Á., Póliska, S., Petrényi, K., Kovács, K., Issa, L., Emri, T., Pócsi, I., Dombrádi, V.: Deletion of the fungus specific protein phosphatase Z1 exaggerates the oxidative stress response in Candida albicans.
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Keresztessy, Z., Erdős, E., Ozgyin, L., Kádas, J., Horváth, J., Zahuczky, G., Bálint, B.: Development of an antibody control system using phage display.
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Klusóczki, Á., Veréb, Z., Vámos, A., Fischer-Posovszky, P., Wabitsch, M., Bacsó, Z., Fésüs, L., Kristóf, E.: Differentiating SGBS adipocytes respond to PPAR gamma stimulation, irisin and BMP7 by functional browning and beige characteristics.
Sci. Rep. 9 (1), 1-35, 2019.

Boros-Oláh, B., Dobos, N., Hornyák, L., Szabó, Z., Karányi, Z., Halmos, G., Roszik, J., Székvölgyi, L.: Drugging the R-loop interactome: RNA-DNA hybrid binding proteins as targets for cancer therapy.
DNA Repair. 84 1-10, 2019.

Giannakis, N., Sansbury, B., Patsalos, A., Hays, T., Riley, C., Han, X., Spite, M., Nagy, L.: Dynamic changes to lipid mediators support transitions among macrophage subtypes during muscle regeneration.
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Zilahi, E., Adamecz, Z., Bodoki, L., Griger, Z., Póliska, S., Nagy-Vincze, M., Dankó, K.: Dysregulated expression profile of myomiRs in the skeletal muscle of patients with polymyositis.
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Fuxreiter, M., Panchenko, A.: Editorial overview: Dynamic protein interactions - from complexes to molecular machines.
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Budai, Z., Sarang, Z.: Étrendkiegészítők az edzésben: mítoszok és tények.
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Ozgyin, L., Horváth, A., Hevessy, Z., Bálint, B.: Extensive epigenetic and transcriptomic variability between genetically identical human B-lymphoblastoid cells with implications in pharmacogenomics research.
Sci Rep. 9 1-16, 2019.

Fésüs, L., Purton, M.: FEBS Open Bio seeks an Editor-in-Chief.
FEBS Open Bio. 9 (9), 1492, 2019.

Fuxreiter, M.: Fold or not to fold upon binding - does it really matter?.
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Póliska, S., Besenyei, T., Végh, E., Hamar, A., Karancsiné Pusztai, A., Váncsa, A., Bodnár, N., Szamosi, S., Csumita, M., Kerekes, G., Szabó, Z., Nagy, Z., Szűcs, G., Szántó, S., Zahuczky, G., Nagy, L., Szekanecz, Z.: Gene expression analysis of vascular pathophysiology related to anti-TNF treatment in rheumatoid arthritis.
Arthritis Res. Ther. 21 (1), 94, 2019.

Saravanabhavan, S., Rethinasabapathy, M., Sarang, Z., Kalambettu, A., Elumalai, S., Janakiraman, M., Huh, Y., Natesan, B.: Graphene oxide functionalized with chitosan based nanoparticles as a carrier of siRNA in regulating Bcl-2 expression on Saos-2 & MG-63 cancer cells and its inflammatory response on bone marrow derived cells from mice.
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Szatmári-Tóth, M., Ilmarinen, T., Mikhailova, A., Skottman, H., Kauppinen, A., Kaarniranta, K., Kristóf, E., Lytvynchuk, L., Veréb, Z., Fésüs, L., Petrovski, G.: Human Embryonic Stem Cell-Derived Retinal Pigment Epithelium-Role in Dead Cell Clearance and Inflammation.
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Smith, D., Martinelli, R., Besra, G., Illarionov, P., Szatmári, I., Brázda, P., Allen, M., Xu, W., Wang, X., Nagy, L., Dowell, R., Rook, G., Rosa, B., Lowry, C.: Identification and characterization of a novel anti-inflammatory lipid isolated from Mycobacterium vaccae, a soil-derived bacterium with immunoregulatory and stress resilience properties.
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Arianti, R., Shaw, A., Vámos, A., Bartáné Tóth, B., Győry, F., Póliska, S., Kristóf, E., Fésüs, L.: Identification of unique molecular signature ofbrowning in human primary adipocytes fromdeep and subcutaneous neck fat.
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Volkó, J., Kenesei, Á., Zhang, M., Várnai, P., Mocsár, G., Petrus, M., Jambrovics, K., Balajthy, Z., Müller, G., Dóczy-Bodnár, A., Tóth, K., Waldmann, T., Vámosi, G.: IL-2 receptors preassemble and signal in the ER/Golgi causing resistance to antiproliferative anti-IL-2R[alfa] therapies.
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Virok, D., Raffai, T., Kókai, D., Paróczai, D., Bogdanov, A., Veres, G., Vécsei, L., Póliska, S., Tiszlavicz, L., Somogyvári, F., Endresz, V., Burián, K.: Indoleamine 2,3-Dioxygenase Activity in Chlamydia muridarum and Chlamydia pneumoniae Infected Mouse Lung Tissues.
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Kristóf, E., Klusóczki, Á., Veress, R., Shaw, A., Combi, Z., Varga, K., Győry, F., Balajthy, Z., Bai, P., Bacsó, Z., Fésüs, L.: Interleukin-6 released from differentiating human beige adipocytes improves browning.
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Aladdin, A., Király, R., Botó, P., Regdon, Z., Tar, K.: Juvenile Huntington's disease skin fibroblasts respond with elevated parkin level and increased proteasome activity as a potential mechanism to counterbalance the pathological consequences of mutant huntingtin protein.
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Horváth, A., Dániel, B., Széles, L., Cuaranta-Monroy, I., Czimmerer, Z., Ozgyin, L., Steiner, L., Kiss, M., Simándi, Z., Póliska, S., Giannakis, N., Raineri, E., Gut, I., Nagy, B., Nagy, L.: Labelled regulatory elements are pervasive features of the macrophage genome and are dynamically utilized by classical and alternative polarization signals.
Nucleic Acids Res. 47 (6), 2778-2792, 2019.

Deák, E., Szalai, E., Tóth, N., Malik, R., Berta, A., Csutak, A.: Longitudinal changes in corneal cell and nerve fiber morphology 2 in young patients with type 1 diabetes with and without diabetic 3 retinopathy: a 2-year follow-up study.
Invest. Ophthalmol. Vis. Sci. 60 (2), 830-837, 2019.

Sághy, T., Köröskényi, K., Hegedűs, K., Antal, M., Bankó, C., Bacsó, Z., Papp, A., Stienstra, R., Szondy, Z.: Loss of Transglutaminase 2 Sensitizes for DietInduced Obesity-Related Inflammation and Insulin Resistance due to Enhanced Macrophage c-Src Signaling.
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Palm, A., Lemey, P., Jansson, M., Månsson, F., Kvist, A., Szojka, Z., Biague, A., da Silva, Z., Rowland-Jones, S., Norrgren, H., Esbjörnsson, J., Medstrand, P., SWEGUB CORE Group: Low Postseroconversion CD4+ T-cell Level Is Associated with Faster Disease Progression and Higher Viral Evolutionary Rate in HIV-2 Infection.
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Budai, Z., Ujlaky-Nagy, L., Kis, G., Antal, M., Bankó, C., Bacsó, Z., Szondy, Z., Sarang, Z.: Macrophages engulf apoptotic and primary necrotic thymocytes through similar phosphatidylserine-dependent mechanisms.
FEBS Open Bio. 9 446-456, 2019.

Nagy, L., Rauch, B., Balla, N., Ujlaki, G., Kis, G., Omar, A., Kristóf, E., Sipos, A., Antal, M., Tóth, A., Debreceni, T., Horváth, A., Maros, T., Csizmadia, P., Szerafin, T., Bai, P.: Olaparib induces browning of in vitro cultures of human primary white adipocytes.
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Sivadó, É., El Alaoui, M., Király, R., Fésüs, L., Delolme, F., Page, A., El Alaoui, S.: Optimised methods (SDS/PAGE and LC-MS) reveal deamidation in all examined transglutaminase-mediated reactions.
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Lasher, D., Szabó, A., Masamune, A., Chen, J., Xiao, X., Whitcomb, D., Barmada, M., Ewers, M., Ruffert, C., Paliwal, S., Issarapu, P., Bhaskar, S., Mani, K., Chandak, G., Laumen, H., Masson, E., Kume, K., Hamada, S., Nakano, E., Seltsam, K., Bugert, P., Müller, T., Groneberg, D., Shimosegawa, T., Rosendahl, J., Férec, C., Lowe, M., Witt, H., Sahin-Tóth, M.: Protease-Sensitive Pancreatic Lipase Variants Are Associated With Early Onset Chronic Pancreatitis.
Am. J. Gastroenterol. 114 (6), 974-983, 2019.

Simon, Á., Gulyás, G., Mészár, Z., Bhide, M., Oláh, J., Bai, P., Csősz, É., Jávor, A., Komlósi, I., Gálné Remenyik, J., Czeglédi, L.: Proteomics alterations in chicken jejunum caused by 24 h fasting.
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Sarang, Z., Sághy, T., Budai, Z., Ujlaky-Nagy, L., Bedekovics, J., Beke, L., Méhes, G., Nagy, G., Rühl, R., Moise, A., Palczewski, K., Szondy, Z.: Retinol Saturase Knock-Out Mice are Characterized by Impaired Clearance of Apoptotic Cells and Develop Mild Autoimmunity.
Biomolecules. 9 (11), 737, 2019.

Márton, I., Horváth, J., Lábiscsák, P., Márkus, B., Dezső, B., Szabó, A., Tar, I., Piffkó, J., Jakus, P., Barabás, J., Barabás, P., Olasz, L., Kövér, Z., Tőzsér, J., Sándor, J., Csősz, É., Scholtz, B., Kiss, C.: Salivary IL-6 mRNA is a Robust Biomarker in Oral Squamous Cell Carcinoma.
J Clin Med. 8 (11), 1-12, 2019.

Budai, Z., Balogh, L., Sarang, Z.: Short-term high-fat meal intake alters the expression of circadian clock-, inflammation-, and oxidative stress-related genes in human skeletal muscle.
Int. J. Food Sci. Nutr. 70 (6), 749-758, 2019.

Piaszyk-Borychowska, A., Széles, L., Csermely, A., Chiang, H., Wesoly, J., Lee, C., Nagy, L., Bluyssen, H.: Signal Integration of IFN-I and IFN-II With TLR4 Involves Sequential Recruitment of STAT1-Complexes and NFkB to Enhance Pro-inflammatory Transcription.
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Sharma, R., Demény, M., Ambrus, V., Király, S., Kurtán, T., Gatti-Lafranconi, P., Fuxreiter, M.: Specific and fuzzy interactions cooperate in modulating protein half-life.
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Shanmuga Sundar, S., Kannan, N., Sundaravadivel, E., Sarang, Z., Mukunthan, K., Manokaran, J., Narendranath, J., Kamalakannan, V., Kavitha, P., Prabhu, V., Balasubramanian, N.: Study on the inflammatory response of PMMA/polystyrene/silica nanocomposite membranes for drug delivery and dental applications.
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Patsalos, A., Tzerpos, P., Halász, L., Nagy, G., Pap, A., Giannakis, N., Lyroni, K., Koliaraki, V., Pintye, É., Dezső, B., Kollias, G., Spilianakis, C., Nagy, L.: The BACH1-HMOX1 Regulatory Axis Is Indispensable for Proper Macrophage Subtype Specification and Skeletal Muscle Regeneration.
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Szabó, K., Jakab, Á., Póliska, S., Emri, T., Pócsi, I., Dombrádi, V.: The effect of the CaPpz1 protein phosphatase on gene expression in Candida albicans under oxidative stress conditions.
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Farkas, Z., Petric, M., Liu, X., Herit, F., Rajnavölgyi, É., Szondy, Z., Budai, Z., Orbán, T., Sándor, S., Mehta, A., Bajtay, Z., Kovács, T., Jung, S., Afaq Shakir, M., Qin, J., Zhou, Z., Niedergang, F., Boissan, M., Takács-Vellai, K.: The nucleoside diphosphate kinase NDK-1/NME1 promotes phagocytosis in concert with DYN-1/Dynamin.
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Töröcsik, D., Weise, C., Gericke, J., Szegedi, A., Lucas, R., Mihály, J., Worm, M., Rühl, R.: Transcriptomic and lipidomic profiling of eicosanoid/docosanoid signalling in affected and non-affected skin of human atopic dermatitis patients.
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Jambrovics, K., Uray, I., Keresztessy, Z., Keillor, J., Fésüs, L., Balajthy, Z.: Transglutaminase 2 programs differentiating acute promyelocytic leukemia cells in all-trans retinoic acid treatment to inflammatory stage through NF-kB activation.
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Bozóki, B., Mótyán, J., Miczi, M., Gazda, L., Tőzsér, J.: Use of Recombinant Fusion Proteins in a Fluorescent Protease Assay Platform and Their In-gel Renaturation.
JoVE. 143 1-15, 2019.

Al Zaeed, N., Budai, Z., Gyenes, D., Szondy, Z., Sarang, Z.: Vázizom regeneráció folyamatának vizsgálata egér kísérleti modellben.
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Purton, M., Michelangeli, F., Fésüs, L.: Will Plan S put learned societies in jeopardy?.
FEBS Lett. 593 (4), 383-385, 2019.

Budai, Z., Balogh, L., Sarang, Z.: Altered gene expression of muscle satellite cells contributes to age-related sarcopenia in mice.
Curr Aging Sci. 11 (3), 165-172, 2018.

Palkó, E., Póliska, S., Sziklai, I., Penyige, A.: Analysis of KRT1, KRT10, KRT19, TP53 and MMP9 expression in pediatric and adult cholesteatoma.
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Koczok, K., Merő, G., P. Szabó, G., Madar, L., Gombos, É., Ajzner, É., Mótyán, J., Hortobágyi, T., Balogh, I.: A novel point mutation affecting Asn76 of dystrophin protein leads to dystrophinopathy.
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Agostini, M., Schoenmakers, E., Beig, J., Fairall, L., Szatmári, I., Rajanayagam, O., Muskett, F., Adams, C., Marais, A., O'Rahilly, S., Semple, R., Nagy, L., Majithia, A., Schwabe, J., Blom, D., Murphy, R., Chatterjee, K., Savage, D.: A Pharmacogenetic Approach to the Treatment of Patients With PPARG Mutations.
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Bozóki, B., Gazda, L., Tóth, F., Miczi, M., Mótyán, J., Tőzsér, J.: A recombinant fusion protein-based, fluorescent protease assay for high throughput-compatible substrate screening.
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Simándi, Z., Pájer, K., Károlyi, K., Sieler, T., Jiang, L., Kolostyák, Z., Sári, Z., Fekecs, Z., Pap, A., Patsalos, A., Contreras, G., Rehó, B., Papp, Z., Guo, X., Horváth, A., Kiss, G., Keresztessy, Z., Vámosi, G., Hickman, J., Xu, H., Dormann, D., Hortobágyi, T., Antal, M., Nógrádi, A., Nagy, L.: Arginine Methyltransferase PRMT8 Provides Cellular Stress Tolerance in Aging Motoneurons.
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Bálint, B.: A tiltás gyümölcse.
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Sipos, É., Dobos, N., Rózsa, D., Molnár-Fodor, K., Oláh, G., Szabó, Z., Székvölgyi, L., Schally, A., Halmos, G.: Characterization of Luteinizing hormone-releasing hormone (LH-RH-I) receptor type I as a potential molecular target in OCM-1 and OCM-3 human uveal melanoma cell lines.
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Pancsa, R., Zsólyomi, F., Tompa, P.: Co-Evolution of Intrinsically Disordered Proteins with Folded Partners Witnessed by Evolutionary Couplings.
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Fillér, C., Hornyák, L., Roszik, J.: Commentary: Nuclear dynamics of the Set1C subunit Spp1 prepares meiotic recombination sites for break formation.
Front Genet. 9 1-2, 2018.

Gulyás, G., Pohóczky, K., Csősz, É., Simon, Á., Jávor, A., Czeglédi, L.: Comparative proteome analysis of skeletal muscle between Merino and Tsigai lambs.
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Moreira, T., Gomes-Santos, A., Horta, L., Goncalves, M., Santiago, A., Lauar, J., dos Reis, D., Castro-Junior, A., Lemos, L., Guimaraes, M., Aguilar, E., Pap, A., Amaral, J., Alvarez-Leite, J., Cara, D., Rezende, R., Nagy, L., Faria, A., Maioli, T.: Consumption of conjugated linoleic acid (CLA)-supplemented diet during colitis development ameliorates gut inflammation without causing steatosis in mice.
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Arányi, T., Bálint, B.: Danube Epigenetic Conference 2018.
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Mótyán, J., Miczi, M., Bozóki, B., Tőzsér, J.: Data supporting Ni-NTA magnetic bead-based fluorescent protease assay using recombinant fusion protein substrates.
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Divoux, A., Sándor, K., Bojcsuk, D., Talukder, A., Li, X., Bálint, B., Osborne, T., Smith, S.: Differential open chromatin profile and transcriptomic signature define depot-specific human subcutaneous preadipocytes: primary outcomes.
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Emri, T., Antal, K., Riley, R., Karányi, Z., Miskei, M., Orosz, E., Baker, S., Wiebenga, A., De Vries, R., Pócsi, I.: Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance.
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Czimmerer, Z., Horváth, A., Dániel, B., Nagy, G., Cuaranta-Monroy, I., Kiss, M., Kolostyák, Z., Póliska, S., Steiner, L., Giannakis, N., Varga, T., Nagy, L.: Dynamic transcriptional control of macrophage miRNA signature via inflammation responsive enhancers revealed using a combination of next generation sequencing-based approaches.
Biochim. Biophys. Acta. Gene Regul. Mech. 1861 (1), 14-28, 2018.

Hegedűs, É., Kókai, E., Nánási, P., Imre, L., Halász, L., Jossé, R., Antunovics, Z., Webb, M., El Hage, A., Pommier, Y., Székvölgyi, L., Dombrádi, V., Szabó, G.: Endogenous single-strand DNA breaks at RNA polymerase II promoters in Saccharomyces cerevisiae.
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Fejes, Z., Czimmerer, Z., Szűk, T., Póliska, S., Horváth, A., Balogh, E., Jeney, V., Váradi, J., Fenyvesi, F., Balla, G., Édes, I., Balla, J., Kappelmayer, J., Nagy, B.: Endothelial cell activation is attenuated by everolimus via transcriptional and post-transcriptional regulatory mechanisms after drug-eluting coronary stenting.
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Patten, D., Corleone, G., Győrffy, B., Perone, Y., Slaven, N., Barozzi, I., Erdős, E., Saiakhova, A., Goddard, K., Vingiani, A., Shousha, S., Pongor, L., Hadjiminas, D., Schiavon, G., Barry, P., Palmieri, C., Coombes, R., Scacheri, P., Pruneri, G., Magnani, L.: Enhancer mapping uncovers phenotypic heterogeneity and evolution in patients with luminal breast cancer.
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Troilo, F., Bignon, C., Gianni, S., Fuxreiter, M., Longhi, S.: Experimental Characterization of Fuzzy Protein Assemblies: Interactions of Paramyxoviral NTAIL Domains With Their Functional Partners.
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Czimmerer, Z., Nagy, Z., Nagy, G., Horváth, A., Silye-Cseh, T., Kriston, Á., Jonás, D., Sauer, S., Steiner, L., Dániel, B., Deleuze, J., Nagy, L.: Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages.
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Fuxreiter, M.: Fuzziness in Protein Interactions: a Historical Perspective.
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Töröcsik, D., Kovács, D., Póliska, S., Szentkereszty-Kovács, Z., Lovászi, M., Dull, K., Szegedi, A., Zouboulis, C., Ståhle, M.: Genome wide analysis of TLR1/2- and TLR4-activated SZ95 sebocytes reveals a complex immune-competence and identifies serum amyloid A as a marker for activated sebaceous glands.
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Szabó, A., Gogolák, P., Koncz, G., Földvári, Z., Pázmándi, K., Miltner, N., Póliska, S., Bácsi, A., Djurovic, S., Rajnavölgyi, É.: Immunomodulatory capacity of the serotonin receptor 5-HT2B in a subset of human dendritic cells.
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Béke, G., Dajnoki, Z., Kapitány, A., Gáspár, K., Retzlerné Medgyesi, B., Póliska, S., Hendrik, Z., Péter, Z., Töröcsik, D., Bíró, T., Szegedi, A.: Immunotopographical Differences of Human Skin.
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Tóth, F., Tőzsér, J., Hegedűs, C.: Indukálható bone morphogenetic protein 7 (BMP-7) termelő fogbél eredetű őssejtvonal létrehozása és vizsgálata.
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Mahdi, M., Szojka, Z., Mótyán, J., Tőzsér, J.: Inhibitory effects of HIV-2 Vpx on replication of HIV-1.
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Patsalos, A., Simándi, Z., Hays, T., Peloquin, M., Hajian, M., Restrepo, I., Coen, P., Russell, A., Nagy, L.: In vivo GDF3 administration abrogates aging related muscle regeneration delay following acute sterile injury.
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Beceiro, S., Pap, A., Czimmerer, Z., Sallam, T., Guillén, J., Gallardo, G., Hong, C., A-Gonzalez, N., Tabraue, C., Diaz, M., Lopez, F., Matalonga, J., Valledor, A., Dominguez, P., Ardavin, C., Delgado-Martin, C., Partida-Sanchez, S., Rodriguez-Fernandez, J., Nagy, L., Tontonoz, P., Castrillo, A.: Liver X Receptor Nuclear Receptors Are Transcriptional Regulators of Dendritic Cell Chemotaxis.
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Ozgyin, L., Horváth, A., Bálint, B.: Lyophilized human cells stored at room temperature preserve multiple RNA species at excellent quality for RNA sequencing.
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Biswas, B., Batista, F., Sundaram, S., Stanley, P.: MGAT1 and Complex N-Glycans Regulate ERK Signaling During Spermatogenesis.
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Bai, P., Nagy, L., Abdul-Rahman, O., Rauch, B., Balla, N., Kristóf, E., Tóth, A., Szerafin, T.: NAD+ homeostasis plays role in mitochondrial biogenesis during beige adipocyte differentiation.
Biochim. Biophys. Acta. Bioenerg. 1859 e36, 2018.

Karányi, Z., Halász, L., Acquaviva, L., Jonás, D., Hetey, S., Boros-Oláh, B., Peng, F., Chen, D., Klein, F., Géli, V., Székvölgyi, L.: Nuclear dynamics of the Set1C subunit Spp1 prepares meiotic recombination sites for break formation.
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Horváth, J., Szabó, A., Tar, I., Dezső, B., Kiss, C., Márton, I., Scholtz, B.: Oral Health May Affect the Performance of mRNA-Based Saliva Biomarkers for Oral Squamous Cell Cancer.
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Kannan, N., Shanmuga Sundar, S., Balaji, S., Arul, A., Anil Kumar, N., Balasubramanian, N.: Physiochemical characterization and cytotoxicity evaluation of mercury-based formulation for the development of anticancer therapeuticals.
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Márton, J., Péter, M., Balogh, G., Bódi, B., Vida, A., Szántó, M., Bojcsuk, D., Jankó, L., Bhattoa, H., Gombos, I., Uray, K., Horváth, I., Török, Z., Bálint, B., Papp, Z., Vígh, L., Bai, P.: Poly(ADP-ribose) polymerase-2 is a lipid-modulated modulator of muscular lipid homeostasis.
Biochim. Biophys. Acta. Mol. Cell Biol. Lipids. 1863 (11), 1399-1412, 2018.

Boeynaems, S., Alberti, S., Fawzi, N., Mittag, T., Polymenidou, M., Rousseau, F., Schymkowitz, J., Shorter, J., Wolozin, B., Bosch, L., Tompa, P., Fuxreiter, M.: Protein Phase Separation: a New Phase in Cell Biology.
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Bohn, T., Planchon, S., Leclercq, C., Renaut, J., Mihály, J., Béke, G., Rühl, R.: Proteomic responses of carotenoid and retinol administration to Mongolian gerbils.
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Lucas, R., Mihály, J., Lowe, G., Graham, D., Szklenár, M., Szegedi, A., Töröcsik, D., Rühl, R.: Reduced Carotenoid and Retinoid Concentrations and Altered Lycopene Isomer Ratio in Plasma of Atopic Dermatitis Patients.
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Botó, P., Csuth, T., Szatmári, I.: RUNX3-Mediated Immune Cell Development and Maturation.
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Simándi, Z., Horváth, A., Cuaranta-Monroy, I., Sauer, S., Deleuze, J., Nagy, L.: RXR heterodimers orchestrate transcriptional control of neurogenesis and cell fate specification.
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Csősz, É., Márkus, B., Darula, Z., Medzihradszky-Fölkl, K., Nemes, J., Szabó, E., Tőzsér, J., Kiss, C., Márton, I.: Salivary proteome profiling of oral squamous cell carcinoma in a Hungarian population.
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Klusóczki, Á., Kristóf, E., Fischer-Posovszky, P., Wabitsch, M., Bacsó, Z., Fésüs, L.: SGBS preadipocyte cell line can serve for human beige type of thermogenic browning adipocyte differentiation.
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Virga, J., Bognár, L., Hortobágyi, T., Csősz, É., Kalló, G., Zahuczky, G., Steiner, L., Hutóczki, G., Reményi-Puskár, J., Klekner, Á.: The Expressional Pattern of Invasion-Related Extracellular Matrix Molecules in CNS Tumors.
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Dániel, B., Nagy, G., Horváth, A., Czimmerer, Z., Cuaranta-Monroy, I., Póliska, S., Hays, T., Sauer, S., Francois-Deleuze, J., Nagy, L.: The IL-4/STAT6/PPAR[gamma] signaling axis is driving the expansion of the RXR heterodimer cistrome, providing complex ligand responsiveness in macrophages.
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Dániel, B., Nagy, G., Czimmerer, Z., Horváth, A., Hammers, D., Cuaranta-Monroy, I., Póliska, S., Tzerpos, P., Kolostyák, Z., Hays, T., Patsalos, A., Houtman, R., Sauer, S., Francois-Deleuze, J., Rastinejad, F., Bálint, B., Sweeney, H., Nagy, L.: The Nuclear Receptor PPAR[gamma] Controls Progressive Macrophage Polarization as a Ligand-Insensitive Epigenomic Ratchet of Transcriptional Memory.
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Bana, N., Nyíri, A., Nagy, J., Frank, K., Nagy, T., Stéger, V., Schiller, M., Lakatos, P., Sugár, L., Horn, P., Barta, E., Orosz, L.: The red deer Cervus elaphus genome CerEla1.0: sequencing, annotating, genes, and chromosomes.
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Hornyák, L., Dobos, N., Koncz, G., Karányi, Z., Páll, D., Szabó, Z., Halmos, G., Székvölgyi, L.: The role of indoleamine-2,3-dioxygenase (IDO) in cancer development, diagnostics, and therapy.
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Czimmerer, Z., Dániel, B., Horváth, A., Rückerl, D., Nagy, G., Kiss, M., Peloquin, M., Budai, M., Cuaranta-Monroy, I., Simándi, Z., Steiner, L., Nagy, B., Póliska, S., Bankó, C., Bacsó, Z., Schulman, I., Sauer, S., Deleuze, J., Allen, J., Benkő, S., Nagy, L.: The Transcription Factor STAT6 Mediates Direct Repression of Inflammatory Enhancers and Limits Activation of Alternatively Polarized Macrophages.
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Dajnoki, Z., Béke, G., Kapitány, A., Gáspár, K., Póliska, S., Hendrik, Z., Péter, Z., Töröcsik, D., Bíró, T., Szegedi, A.: Topographical differences in immune and barrier functions of human skin.
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Fuxreiter, M.: Towards a Stochastic Paradigm: from Fuzzy Ensembles to Cellular Functions.
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Fésüs, L., Király, R.: Transzglutamináz.
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Virga, J., Bognár, L., Hortobágyi, T., Zahuczky, G., Csősz, É., Kalló, G., Tóth, J., Hutóczki, G., Reményi-Puskár, J., Steiner, L., Klekner, Á.: Tumor Grade versus Expression of Invasion-Related Molecules in Astrocytoma.
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Mótyán, J., Müller, V., Tőzsér, J.: Vírus proteázok.
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Csősz, É., Tóth, N., Deák, E., Csutak, A., Tőzsér, J.: Wound-Healing Markers Revealed by Proximity Extension Assay in Tears of Patients following Glaucoma Surgery.
Int. J. Mol. Sci. 19 (12), 1-19, 2018.

Rácz, R., Bereczki, J., Kosztolányi, A., Horváth, A., Sziráki, S., Barta, Z.: Additional polymorphic microsatellite loci for detailed population genetic studies of Lethrus apterus (Coleoptera: Geotrupidae).
Acta Zool. Acad. Sci. Hung. 63 (3), 355-360, 2017.

Köröskényi, K., Joós, G., Szondy, Z.: Adenosine in the Thymus.
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Sándor, K., Pallai, A., Duró, E., Legendre, P., Couillin, I., Sághy, T., Szondy, Z.: Adenosine produced from adenine nucleotides through an interaction between apoptotic cells and engulfing macrophages contributes to the appearance of transglutaminase 2 in dying thymocytes.
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Papp, G., Chen, J., Póliska, S., Szabó, K., Tarr, T., Bálint, B., Szodoray, P., Zeher, M.: Alterations in microrna expression profiles in primary Sjögren's syndrome and systemic lupus erythematosus.
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Márkus, B., Kristóf, E., Csomós, I., Fésüs, L., Csősz, É.: Analysis of the protein crosslink-profile changes and the neutrophil extracellular trap patterns elicited by different stimuli.
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Szondy, Z., Sarang, Z., Kiss, B., Garabuczi, É., Köröskényi, K.: Anti-inflammatory Mechanisms Triggered by Apoptotic Cells during Their Clearance.
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Pulay, A., Koller, J., Nagy, L., Molnár, M., Réthelyi, J., Magyar Schizobank Konzorcium: A szkizofrénia multilókusz genetikai vizsgálata az idegfejlődés és az immunrendszer zavarának oki szerepére utal(hat).
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Mosolygó, Á., Székvölgyi, L.: Az AtNDX transzkripciós faktor és az R-hurkok kromoszómális topográfiája.
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Bálint, B.: Bestimmung des aufnahmezustands des endometriums.
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Hetey, S., Boros-Oláh, B., Kuik-Rózsa, T., Li, Q., Karányi, Z., Szabó, Z., Roszik, J., Szalóki, N., Vámosi, G., Tóth, K., Székvölgyi, L.: Biophysical characterization of histone H3.3 K27M point mutation.
Biochem. Biophys. Res. Commun. 490 (3), 868-875, 2017.

Mádi, A., Cuaranta-Monroy, I., Lénárt, K., Pap, A., Mezei, Z., Kristóf, E., Oláh, A., Vámosi, G., Bacsó, Z., Bai, P., Fésüs, L.: Browning deficiency and low mobilization of fatty acids in gonadal white adipose tissue leads to decreased cold-tolerance of transglutaminase 2 knock-out mice.
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Hegyi, B., Horváth, B., Váczi, K., Gönczi, M., Kistamás, K., Ruzsnavszky, F., Veress, R., Izu, L., Chen-Izu, Y., Bányász, T., Magyar, J., Csernoch, L., Nánási, P., Szentandrássy, N.: Ca2+-activated Cl- current is antiarrhythmic by reducing both spatial and temporal heterogeneity of cardiac repolarization.
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Magyar, J., Horváth, B., Váczi, K., Hegyi, B., Gönczi, M., Dienes, B., Kistamás, K., Bányász, T., Baczkó, I., Varró, A., Seprényi, G., Csernoch, L., Nánási, P., Szentandrássy, N.: Calcium Activated Chloride Current in Mammalian Ventricular Myocytes.
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Qin, Y., Ekmekcioglu, S., Forget, M., Székvölgyi, L., Hwu, P., Grimm, E., Jazaeri, A., Roszik, J.: Cervical cancer neoantigen landscape and immune activity is associated with HPV master regulators.
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Horváth, A., Simándi, Z., Nagy, L.: Commentaries on Viewpoint: Loopomics: a new functional approach to life.
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Thangaraju, K., Király, R., Mótyán, J., Ambrus, V., Fuxreiter, M., Fésüs, L.: Computational analyses of the effect of novel amino acid clusters of human transglutaminase 2 on its structure and function.
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Sipos, É., Dull, K., Treszl, A., Steiber, Z., Méhes, G., Dobos, N., Molnár-Fodor, K., Oláh, G., Székvölgyi, L., Schally, A., Halmos, G.: Concurrence of chromosome 3 and 4 aberrations in human uveal melanoma.
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Kecskeméti, Á., Bakó, J., Csarnovics, I., Csősz, É., Gáspár, A.: Development of an enzymatic reactor applying spontaneously adsorbed trypsin on the surface of a PDMS microfluidic device.
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Csősz, É., Deák, E., Kalló, G., Csutak, A., Tőzsér, J.: Diabetic retinopathy: proteomic approaches to help the differential diagnosis and to understand the underlying molecular mechanisms.
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Virga, J., Szemcsák, C., Reményi-Puskár, J., Tóth, J., Hortobágyi, T., Csősz, É., Zahuczky, G., Szivos, L., Bognár, L., Klekner, Á.: Differences in Extracellular Matrix Composition and its Role in Invasion in Primary and Secondary Intracerebral Malignancies.
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Budai, M., Tőzsér, J., Benkő, S.: Different dynamics of NLRP3 inflammasome-mediated IL-1[béta] production in GM-CSF- and M-CSF-differentiated human macrophages.
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Gulyás, G., Csősz, É., Prokisch, J., Jávor, A., Mézes, M., Erdélyi, M., Balogh, K., Janáky, T., Szabó, Z., Simon, Á., Czeglédi, L.: Effect of nano-sized, elemental selenium supplement on the proteome of chicken liver.
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Arányi, T., Bálint, B.: Epigenetikai konferencia.
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Rentka, A., Köröskényi, K., Hársfalvi, J., Szekanecz, Z., Szűcs, G., Szodoray, P., Kemény-Beke, Á.: Evaluation of commonly used tear sampling methods and their relevance in subsequent biochemical analysis.
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Nagy, N., Németh, Z., Juhász, E., Póliska, S., Rácz, R., Kosztolányi, A., Barta, Z.: Evaluation of potential reference genes for real-time qPCR analysis in a biparental beetle, Lethrus apterus (Coleoptera: Geotrupidae).
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Thangaraju, K., Király, R., Demény, M., Mótyán, J., Fuxreiter, M., Fésüs, L.: Genomic variants reveal differential evolutionary constraints on human transglutaminases and point towards unrecognized significance of transglutaminase 2.
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Sebestyén, F., Póliska, S., Rácz, R., Bereczki, J., Lénárt, K., Barta, Z., Lendvai, Á., Tökölyi, J.: Insulin/IGF Signaling and Life History Traits in Response to Food Availability and Perceived Density in the Cnidarian Hydra vulgaris.
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Chen, J., Papp, G., Póliska, S., Szabó, K., Tarr, T., Bálint, B., Szodoray, P., Zeher, M.: MicroRNA expression profiles identify disease-specific alterations in systemic lupus erythematosus and primary Sjögren's syndrome.
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Landrier, J., Kasiri, E., Karkeni, E., Mihály, J., Béke, G., Weiss, K., Lucas, R., Aydemir, G., Salles, J., Walrand, S., de Lera, Á., Rühl, R.: Reduced adiponectin expression after high-fat diet is associated with selective up-regulation of ALDH1A1 and further retinoic acid receptor signaling in adipose tissue.
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Gönczi, M., Nagy, D., Bai, P., Pál, B., Kis, G., Antal, M., Csernoch, L.: Role of TASK-3 channels in the mitochondria of melanoma cells.
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Ráki, M., Dahal-Koirala, S., Yu, H., Korponay-Szabó, I., Gyimesi, J., Castillejo, G., Jahnsen, J., Qiao, S., Sollid, L.: Similar Responses of Intestinal T-cells From Untreated Children and Adults With Celiac Disease to Deamidated Gluten Epitopes.
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Sormanni, P., Piovesan, D., Heller, G., Bonomi, M., Kukic, P., Camilloni, C., Fuxreiter, M., Dosztányi, Z., Pappu, R., Babu, M., Longhi, S., Tompa, P., Dunker, A., Uversky, V., Tosatto, S., Vendruscolo, M.: Simultaneous quantification of protein order and disorder.
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