Karaffa, E., Kovács, C., Karaffa, L., Csótó, A.: Endophytic Trichoderma strains open new perspectives for fungi biocontrol.
In: 29. Tiszántúli Növényvédelmi Fórum / 11th International Plant Protection Symposium at University of Debrecen: Program - Programme. Szerk.: Tarcali Gábor, Kövics György János, Debreceni Egyetem, MÉK Növényvédelmi Intézet, Debrecen, 25-26, 2024.

Fekete, E., Bíró, V., Márton, A., Bakondi-Kovács, I., Karaffa, E., Kovács, B., Geoffrion, N., Tsang, A., Kubicek, C., Karaffa, L.: Transcriptomics identify the triggering of citrate export as the key event caused by manganese deficiency in.
Microbiol. Spectr. - 1-18, 2024.

Zabiák, A., Kovács, C., Takács, F., Pál, K., Peles, F., Fekete, E., Karaffa, L., Mihály, K., Flipphi, M., Karaffa, E.: Diaporthe and Diplodia species associated with walnut (Juglans regia L.) in Hungarian orchards.
Horticulturae. 9 (2), 1-15, 2023.

Flipphi, M., Márton, A., Bíró, V., Ág, N., Karaffa, E., Fekete, E., Karaffa, L.: Generation, Transfer, and Loss of Alternative Oxidase Paralogues in the Aspergillaceae Family.
J. Fungi. 9 (12), 1-18, 2023.

Csótó, A., Nagy, A., Laurinyecz, N., Nagy, Z., Németh, C., Németh, E., Csikászné Krizsics, A., Rakonczás, N., Fontaine, F., Fekete, E., Flipphi, M., Karaffa, L., Karaffa, E.: Hybrid Vitis Cultivars with American or Asian Ancestries Show Higher Tolerance towards Grapevine Trunk Diseases.
Plants-Basel. 12 (12), 1-16, 2023.

Reinfurt, A., Fritsche, S., Bíró, V., Márton, A., Ellena, V., Fekete, E., Karaffa, E., Karaffa, L., Steiger, M.: Manganese(II) ions suppress the transcription of the citrate exporter encoding gene cexA in Aspergillus niger.
Front. Bioeng. Biotechnol. 11 1-11, 2023.

Flipphi, M., Márton, A., Bíró, V., Ág, N., Karaffa, E., Fekete, E., Karaffa, L.: Mutations in the Second Alternative Oxidase Gene: A New Approach to Group Aspergillus niger Strains.
J. Fungi. 9 (5), 1-17, 2023.

Csótó, A., Kovács, C., Pál, K., Nagy, A., Peles, F., Fekete, E., Karaffa, L., Kubicek, C., Karaffa, E.: The Biocontrol Potential of Endophytic Trichoderma Fungi Isolated from Hungarian Grapevines, Part II, Grapevine Stimulation.
Pathogens. 12 (1), 1-14, 2023.

Fekete, E., Bíró, V., Márton, A., Bakondi-Kovács, I., Németh, Z., Karaffa, E., Kovács, B., Fábián, I., Kubicek, C., Tsang, A., Karaffa, L.: Bioreactor as the root cause of the "manganese effect" during Aspergillus niger citric acid fermentations.
Front. Bioeng. Biotechnol. 10 1-12, 2022.

Kovács, C., Csótó, A., Pál, K., Nagy, A., Fekete, E., Karaffa, L., Kubicek, C., Karaffa, E.: Endophytic Trichoderma spp. from Hungarian grapevines with biocontrol potential.
In: 16th Congress of the Mediterranean Phytopathological Union : Book of abstracts, [s.n.], [s.l.], 1, 2022.

Meng, J., Németh, Z., Peng, M., Fekete, E., Garrigues, S., Lipzen, A., Ng, V., Savage, E., Zhang, Y., Grigoriev, I., Mäkelä, M., Karaffa, L., De Vries, R.: GalR, GalX and AraR co-regulate D-galactose and L-arabinose utilization in Aspergillus nidulans.
Microbial Biotechnology. 15 (6), 1839-1851, 2022.

Fodor, A., Gualtieri, M., Zeller, M., Tarasco, E., Klein, M., Fodor, A., Haynes, L., Lengyel, K., Forst, S., Furgani, G., Karaffa, L., Vellai, T.: Type Strains of Entomopathogenic Nematode-Symbiotic Bacterium Species, Xenorhabdus szentirmaii (EMC) and X. budapestensis (EMA), Are Exceptional Sources of Non-Ribosomal Templated, Large-Target-Spectral, Thermotolerant-Antimicrobial Peptides (by Both), and Iodinin (by EMC).
Pathogens. 11 (3), 1-29, 2022.

Fekete, E., Pénzes, F., Ág, N., Ág-Rácz, V., Karaffa, E., Scazzocchio, C., Flipphi, M., Karaffa, L.: Unique and Repeated Stwintrons (Spliceosomal Twin Introns) in the Hypoxylaceae.
J. Fungi. 8 (4), 1-23, 2022.

Karaffa, E., Kolláth, I., Fekete, E., Bíró, V., Flipphi, M., Kovács, B., Kubicek, C., Karaffa, L.: Carbon-source dependent interplay of copper and manganese ions modulates the morphology and itaconic acid production in Aspergillus terreus.
Front. Microbiol. 12 1-14, 2021.

Fekete, E., Pénzes, F., Ág, N., Scazzocchio, C., Flipphi, M., Karaffa, L.: Internally Symmetrical Stwintrons and Related Canonical Introns in Hypoxylaceae Species.
J. Fungi. 7 1-21, 2021.

Kovács, C., Csótó, A., Pál, K., Nagy, A., Fekete, E., Karaffa, L., Kubicek, C., Karaffa, E.: The Biocontrol Potential of Endophytic Trichoderma Fungi Isolated from Hungarian Grapevines. Part I. Isolation, Identification and In Vitro Studies.
Pathogens. 10 (12), 1-19, 2021.

Karaffa, L., Fekete, E., Kubicek, C.: The role of metal ions in fungal organic acid accumulation.
Microorganisms. 9 (6), 1-16, 2021.

Ág, N., Kavalecz, N., Pénzes, F., Karaffa, L., Scazzocchio, C., Flipphi, M., Fekete, E.: Complex intron generation in the yeast genus Lipomyces.
Sci. Rep. 10 1-10, 2020.

Fejes, B., Ouedraogo, J., Fekete, E., Karaffa, E., Flipphi, M., Soós, Á., Molnár, Á., Kovács, B., Kubicek, C., Tsang, A., Karaffa, L.: The effects of external Mn2+ concentration on hyphal morphology and citric acid production are mediated primarily by the NRAMP-family transporter DmtA in Aspergillus niger.
Microb Cell Fact. 19 (1), 1-11, 2020.

Kavalecz, N., Ág, N., Karaffa, L., Scazzocchio, C., Flipphi, M., Fekete, E.: A spliceosomal twin intron (stwintron) participates in both exon skipping and evolutionary exon loss.
Sci. Rep. 9 (1), 1-11, 2019.

Karaffa, L., Kubicek, C.: Citric acid and itaconic acid accumulation: variations of the same story?.
Appl. Microbiol. Biotechnol. 103 (7), 2889-2902, 2019.

Németh, Z., Kulcsár, L., Flipphi, M., Orosz, A., Aguilar-Pontes, M., De Vries, R., Karaffa, L., Fekete, E.: L-Arabinose induces D-galactose catabolism via the Leloir pathway in Aspergillus nidulans.
Fungal Genet. Biol. 123 53-59, 2019.

Kolláth, I., Molnár, Á., Soós, Á., Fekete, E., Karaffa, E., Kovács, B., Kubicek, C., Karaffa, L.: Manganese Deficiency Is Required for High Itaconic Acid Production From D-Xylose in Aspergillus terreus.
Front. Microbiol. 10 1-10, 2019.

Molnár, Á., Németh, Z., Fekete, E., Flipphi, M., Keller, N., Karaffa, L.: Analysis of the relationship between alternative respiration and sterigmatocystin formation in Aspergillus nidulans.
Toxins. 10 (4), 168, 2018.

Karaffa, L., Molnár, Á., Kolláth, I., Kovács, B., Soós, Á., Kubicek, C., Fekete, E.: Aspergillus terreus itaconic acid fermentation technology reflects the physiological requirements of overflow metabolism.
In: 11th International Mycological Congress: Mycological Discoveries for a Better World : Abstract Book, Ana G. Méndez University, San Juan, Puerto Rico, 355-356, 2018.

Kolláth, I., Fekete, E., Karaffa, E., Soós, Á., Kovács, B., Karaffa, L.: Effect of copper (Il) ions on itaconic acid prodoction by Aspergilius terreus.
In: VII. Interdiszciplináris Doktorandusz Konferencia 2018 absztraktkötet. Szerk.: Bódog Ferenc, Pécsi Tudományegyetem Doktorandusz Önkormányzat, Pécs, 74, 2018. ISBN: 9789634292104

Molnár, Á., Németh, Z., Kolláth, I., Fekete, E., Flipphi, M., Ág, N., Soós, Á., Kovács, B., Karaffa, E., Kubicek, C., Karaffa, L.: High oxygen tension increases itaconic acid accumulation, glucose consumption, and the expression and activity of alternative oxidase in Aspergillus terreus.
Appl. Microbiol. Biotechnol. 102 (20), 8799-8808, 2018.

Kavalecz, N., Flipphi, M., Ág, N., Karaffa, L., Scazzocchio, C., Fekete, E.: The first instance of a lariat branch point motif-interrupted spliceosomal twin intron in Aspergilius nidulans.
In: VII. Interdiszciplináris Doktorandusz Konferencia 2018 absztraktkötet. Szerk.: Bódog Ferenc, Pécsi Tudományegyetem Doktorandusz Önkormányzat, Pécs, 73, 2018. ISBN: 9789634292104

Fekete, E., Flipphi, M., Ág, N., Kavalecz, N., Cerqueira, G., Scazzocchio, C., Karaffa, L.: A mechanism for a single nucleotide intron shift.
Nucleic Acids Res. 45 (15), 9085-9092, 2017.

De Vries, R., Riley, R., Wiebenga, A., Aguilar-Osorio, G., Amillis, S., Akemi Uchima, C., Anderluh, G., Asadollahi, M., Askin, M., Barry, K., Battaglia, E., Bayram, Ö., Benocci, T., Braus-Stromeyer, S., Caldana, C., Cánovas, D., Cerqueira, G., Chen, F., Chen, W., Choi, C., Clum, A., Corrêa dos, S., Lima Damásio, A., Diallinas, G., Emri, T., Fekete, E., Flipphi, M., Freyberg, S., Gallo,, A., Gournas, C., Habgood, R., Hainaut, M., Harispe, M., Henrissat, B., Hildén, K., Hope, R., Hossain, A., Karabika, E., Karaffa, L., Karányi, Z., Kraševec, N., Kuo, A., Kusch, H., LaButti, K., Lagendijk, E., Lapidus, A., Levasseur, A., Lindquist, E., Lipzen, A., Logrieco, A., MacCabe, A., Mäkelä, M., Malavazi, I., Melin, P., Meyer, V., Mielnichuk, N., Miskei, M., Molnár, Á., Mulé, G., Ngan, C., Orejas, M., Orosz, E., Ouedraogo, J., Overkamp, K., Park, H., Perrone, G., Piumi, F., Punt, P., Ram, A., Ramón, A., Rauscher, S., Record, E., Riaño-Pachón, D., Robert, V., Röhrig, J., Ruller, R., Salamov, A., Salih, N., Samson, R., Karaffa, E., Sanguinetti, M., Schütze, T., Sepčić, K., Shelest, E., Sherlock, G., Sophianopoulou, V., Squina, F., Sun, H., Susca, A., Todd, R., Tsang, A., Unkles, S., Wiele, N., Rossen-Uffink, D., Velasco de, C., Vesth, T., Visser, J., Yu, J., Zhou, M., Andersen, M., Archer, D., Baker, S., Benoit, I., Brakhage, A., Braus, G., Fischer, R., Frisvad, J., Goldman, G., Houbraken, J., Oakley, B., Pócsi, I., Scazzocchio, C., Seiboth, B., Kuyk, P., Wortman, J., Dyer, P., Grigoriev, I.: Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.
Genome Biol. 18 (28), 1-45, 2017.

Flipphi, M., Ág, N., Karaffa, L., Kavalecz, N., Cerqueira, G., Scazzocchio, C., Fekete, E.: Emergence and loss of spliceosomal twin introns.
Fungal Biol Biotechnol. 4 (1), 7, 2017.

Kulcsár, L., Flipphi, M., Jónás, Á., Karaffa, E., Fekete, E., Karaffa, L.: Identification of a mutarotase gene involved in D-galactose utilization in Aspergillus nidulans.
FEMS Microbiol. Lett. 364 1-7, 2017.

Kolláth, I., Molnár, Á., Fekete, E., Karaffa, E., Soós, Á., Kovács, B., Kubicek, C., Karaffa, L.: Production of itaconic acid from D-xylose by Aspergillus terreus.
In: Abstracts of the 5th Central European Forum for Microbiology. Ed.: K. Márialigeti, O. Dobay, Akadémiai Kiadó, Budapest, 136, 2017, (Acta Microbiologica et Immunologica Hungarica, ISSN 1217-8950 ; 64. (Suppl))

Kolláth, I., Molnár, Á., Fekete, E., Karaffa, E., Soós, Á., Kovács, B., Kubicek, C., Karaffa, L.: Production of itaconic acid from D-xylose by Aspergillus terreus.
In: 2nd Symposium on Plant Biomass Conversation by Fungi, Westerdijk Fungal Biodiversity Institute, Utrecht, Hollandia, 25, 2017.

Fekete, E., Orosz, A., Kulcsár, L., Kavalecz, N., Flipphi, M., Karaffa, L.: Characterization of a second physiologically relevant lactose permease gene (lacpB) in Aspergillus nidulans.
Microbiology (Reading, Engl.). 162 837-847, 2016.

Jónás, Á., Fekete, E., Németh, Z., Flipphi, M., Karaffa, L.: D-Galactose catabolism in Penicillium chrysogenum: Expression analysis of the structural genes of the Leloir pathway.
Acta Biol. Hung. 67 (3), 318-332, 2016.

Németh, Z., Molnár, Á., Fejes, B., Novák, L., Karaffa, L., Keller, N., Fekete, E.: Growth-phase sterigmatocystin formation on lactose is mediated via low specific growth rates in Aspergillus nidulans.
Toxins. 8 (12), 354, 2016.

Papp, B., Török, T., Karaffa, E., Fekete, E., Flipphi, M., Karaffa, L.: High cell density cultivation of the chemolithoautotrophic bacterium Nitrosomonas europaea.
Folia Microbiol. 99 (19), 7937-7944, 2016.

Karaffa, L., Diaz, R., Papp, B., Fekete, E., Karaffa, E., Kubicek, C.: A deficiency of manganese ions in the presence of high sugar 5 concentrations is the critical parameter for achieving high yields 6 of itaconic acid by Aspergillus terreus.
Appl. Microbiol. Biotechnol. 99 (19), 7937-7944, 2015.

Ág, N., Flipphi, M., Karaffa, L., Scazzocchio, C., Fekete, E.: Alternatively spliced, spliceosomal twin introns in Helminthosporium solani.
Fungal Genet. Biol. 85 7-13, 2015.

Jónás, Á., Fekete, E., Flipphi, M., Karaffa, E., Jäger, S., Molnár, Á., Szentirmai, A., Karaffa, L.: Extra- and intracellular lactose catabolism in Penicillium chrysogenum: phylogenetic and expression analysis of the putative permease and hydrolase genes.
J. Antibiot. 67 489-497, 2014.

Orosz, A., Fekete, E., Flipphi, M., Karaffa, L.: Metabolism of D-galactose is dispensable for the induction of the beta-galactosidase- (bgaD) and lactose permease (lacpA) genes in Aspergillus nidulans.
FEMS Microbiol. Lett. 359 (1), 19-25, 2014.

Fekete, E., Karaffa, L., Karimi Aghcheh, R., Németh, Z., Fekete, É., Orosz, A., Paholcsek, M., Stágel, A., Kubicek, C.: The transcriptome of lae1 mutants of Trichoderma reesei cultivated at constant growth rates reveals new targets of LAE1 function.
BMC Genomics. 15 447-1 - 447-10, 2014.

Karimi Aghcheh, R., Németh, Z., Atanasova, L., Fekete, E., Paholcsek, M., Karaffa, E., Aquino, B., Druzhinina, I., Karaffa, L., Kubicek, C.: The VELVET A orthologue VEL1 of Trichoderma reesei regulates fungal development and is essential for cellulase gene expression.
PLoS One. 9 (11), e112799-1 - e112799-10, 2014.

Asadollahi, M., Fekete, E., Karaffa, L., Flipphi, M., Árnyasi, M., Esmaeili, M., Váczy, K., Karaffa, E.: Comparison of Botrytis cinerea populations isolated from two open-field cultivated host plants.
Microbiol. Res. 168 379-388, 2013.

Fekete, E., Karaffa, L.: Ipari Biotechnológia.
Tankönyvkiadó, Budapest, 78 p., 2013.

Asadollahi, M., Bérczesné Szojka, A., Fekete, E., Karaffa, L., Takács, F., Flipphi, M., Karaffa, E.: Resistance to QoI Fungicide and Cytochrome b Diversity in the Hungarian Botrytis cinerea Population.
J. Agric. Sci. Technol. 15 397-407, 2013.

Flipphi, M., Fekete, E., Ág, N., Scazzocchio, C., Karaffa, L.: Spliceosome twin introns in fungal nuclear transcripts.
Fungal Genet. Biol. 57 48-57, 2013.

Karaffa, L., Coulier, L., Fekete, E., Overkamp, K., Druzhinina, I., Mikus, M., Seiboth, B., Novák, L., Punt, P., Kubicek, C.: The intracellular galactoglycome in Trichoderma reesei during growth on lactose.
Appl. Microbiol. Biotechnol. 97 (12), 5447-5456, 2013.

Kiss, L., Bereczky, Z., Kassainé Jáger, E., Kovács, M., Batta, G., Deák, T., Fekete, E., Fekete, É., Váczy, Z., Váczy, K., Bisztray, G., Boróczky, G., Csikászné Krizsics, A., Holb, I., Kaptás, T., Karaffa, L., Kocsis, M., Kozma, P., Mukli, D., Schmidt, Á., Sipiczki, M., Tégla, Z.: A strobilurin-rezisztencia molekuláris markere Széles körben elterjedt a hazai szőlő-, Alma- és paprikalisztharmat-populációkban.
Növényvédelem. 48 (11), 489-499, 2012.

Fekete, E., De Vries, R., Seiboth, B., Kuyk, P., Karaffa, E., Fekete, É., Metz, B., Kubicek, C., Karaffa, L.: D-galactose uptake is non-functional in the conidiospores of Aspergillus niger.
FEMS Microbiol. Lett. 329 198-203, 2012.

Fekete, É., Fekete, E., Irinyi, L., Karaffa, L., Árnyasi, M., Asadollahi, M., Karaffa, E.: Genetic diversity of a Botrytis cinerea cryptic species complex in Hungary.
Microbiol. Res. 167 283-291, 2012.

Fekete, E., Karaffa, L., Fekete, É., Seiboth, B., Kubicek, C., Flipphi, M.: Identification of a permease gene involved in lactose utilisation in Aspergillus nidulans.
Fungal Genet. Biol. 49 415-425, 2012.

Kubicek, C., Herrera-Estrella, A., Seidl-Seiboth, V., Martinez, D., Druzhinina, I., Thon, M., Zeilinger, S., Casas-Flores, S., Horwitz, B., Mukherjee, P., Mukherjee, M., Kredics, L., Alcaraz, L., Aerts, A., Antal, Z., Atanasova, L., Cervantes-Badillo, M., Challacombe, J., Chertkov, O., McCluskey, K., Coulpier, F., Deshpande, N., Döhren, H., Ebbole, D., Esquivel-Naranjo, E., Fekete, E., Flipphi, M., Glaser, F., Gómez-Rodríguez, E., Gruber, S., Han, C., Henrissat, B., Hermosa, R., Hernández-Oñate, M., Karaffa, L., Kosti, I., Le Crom, S., Lindquist, E., Lucas, S., Lübeck, M., Lübeck, P., Margeot, A., Metz, B., Misra, M., Nevalainen, H., Omann, M., Packer, N., Perrone, G., Uresti-Rivera, E., Salamov, A., Schmoll, M., Seiboth, B., Shapiro, H., Sukno, S., Tamayo-Ramos, J., Tisch, D., Wiest, A., Wilkinson, H., Zhang, M., Coutinho, P., Kenerley, C., Monte, E., Baker, S., Grigoriev, I.: Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.
Genome Biol. 12 (4), 1-15, 2011.

Bérczesné Szojka, A., Asadollahi, M., Fekete, É., Fekete, E., Karaffa, L., Karaffa, E.: Magyarországi Botrytis cinerea izolátumok azoxystrobin rezisztenciájának vizsgálata real-time PCR technika segítségével.
Agrártud. közl. 43 41-44, 2011.

Portnoy, T., Margeot, A., Linke, R., Atanasova, L., Fekete, E., Karaffa, E., Hartl, L., Karaffa, L., Druzhinina, I., Seiboth, B., Le Crom, S., Kubicek, C.: The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation.
BMC Genomics. 12 (269), 1-12, 2011.

Kubicek, C., Karaffa, L.: Citric acid processes.
In: Encyclopedia of Industrial Biotechnology: Bioprocess, Bioseparation, and Cell Technology. Ed.: by Michael C. Flickinger, John Wiley & Sons, Inc., Hoboken, N.J., U.S.A., 1652-1658, 2010.

Asadollahi, M., Fekete, É., Fekete, E., Karaffa, L., Irinyi, L., Karaffa, E.: Magyarországi Botrytis cinerea izolátumok citokróm b génjének diverzitása.
Agrártud. közl. 39 18-21, 2010.

Flipphi, M., Sun, J., Robellet, X., Karaffa, L., Fekete, E., Zeng, A., Kubicek, C.: Biodiversity and evolution of primary carbon metabolism in Aspergillus nidulans and other Aspergillus spp..
Fungal Genet. Biol. Suppl. 46 (1), 19-44, 2009.

Wortman, J., Gilsenan, J., Joardar, V., Deegan, J., Clutterbuck, J., Andersen, M., Archer, D., Bencina, M., Braus, G., Coutinho, P., Döhren, H., Doonan, J., Driessen, A., Durek, P., Espeso, E., Fekete, E., Flipphi, M., Estrada, C., Geysens, S., Goldman, G., Groot, P., Hansen, K., Harris, S., Heinekamp, T., Helmstaedt, K., Henrissat, B., Hofmann, G., Homan, T., Horio, T., Horiuchi, H., James, S., Jones, M., Karaffa, L., Karányi, Z., Kato, M., Keller, N., Kelly, D., Kiel, J., Kim, J., Klei, I., Klis, F., Kovalchuk, A., Kraševec, N., Kubicek, C., Liu, B., MacCabe, A., Meyer, V., Mirabito, P., Miskei, M., Mos, M., Mullins, J., Nelson, D., Nielsen, J., Oakley, B., Osmani, S., Pakula, T., Paszewski, A., Paulsen, I., Pilsyk, S., Pócsi, I., Punt, P., Ram, A., Ren, Q., Robellet, X., Robson, G., Seiboth, B., Solingen, P., Specht, T., Sun, J., Taheri-Talesh, N., Takeshita, N., Ussery, D., Kuyk, P., Visser, H., Vondervoort, P., De Vries, R., Walton, J., Xiang, X., Xiong, Y., Zeng, A., Brandt, B., Cornell, M., Hondely, C., Visser, J., Oliver, S., Turner, G.: The 2008 update of the Aspergillus nidulans genome annotation: A community effort.
Fungal Genet. Biol. 46 (1), 2-13, 2009.

Fekete, E., Seiboth, B., Kubicek, C., Szentirmai, A., Karaffa, L.: Lack of aldose-1 epimerase in Hypocrea jecorina (anamorph Trichoderma reesei): a key to cellulase gene expression on lactose.
Proc. Natl. Acad. Sci. USA. 105 (20), 7141-7146, 2008.

Fekete, E., Padra, J., Szentirmai, A., Karaffa, L.: Lactose and D-galactose catabolism in the filamentous fungus Aspergillus nidulans.
Acta Microbiol. Immunol. Hung. 55 (2), 119-124, 2008.

Váczy, K., Karaffa, E., Karaffa, L., Fekete, E., Fekete, É., Árnyasi, M., Czeglédi, L., Kövics, G., Druzhinina, I., Kubicek, C.: Sexual Recombination in the Botrytis cinerea populations in Hungarian Vineyards.
Phytopathol. 98 (12), 1312-1319, 2008.

Váczy, K., Karaffa, L., Kövics, G., Gál, L., Rudó, N., Karaffa, E.: A Botrytis cinerea transzpozon elemeinek és micéliális kompatibilitási csoportjainak vizsgálata az Egri és Tokaji borvidékeken.
In: Vas Károly Tudományos Ülésszak: összefoglalók. Élelmiszertudományi Kar / Barta József (elnök); Badakné Kerti Katalin (tag, és mások), Budapesti Corvinus Egyetem, Budapest, 98-98, 2007. ISBN: 9789630633505

Fekete, E., Karaffa, L., Kubicek, C., Szentirmai, A., Seiboth, B.: Induction of extracellular [beta]-galactosidase (Bga1) formation by D-galactose in Hypocrea jecorina is mediated by galactitol.
Microbiology (Reading, Engl.). 153 (2), 507-512, 2007.

Váczy, K., Karaffa, L., Karaffa, E., Kövics, G.: Szürkerothadást okozó botrytis cinerea populációk jellemzése miniszatellit-szekvencia vizsgálatával.
Növényvédelem. 43 (2), 57-61, 2007.

Karaffa, L., Fekete, E., Gamauf, C., Szentirmai, A., Kubicek, C., Seiboth, B.: D-Galactose induces cellulase gene expression in Hypocrea jecorina at low growth rates.
Microbiology (Reading, Engl.). 152 1507-1514, 2006.

Kubicek, C., Karaffa, L.: Organic acids.
In: Basic Biotechnology, 3rd Edition. Ed.: by Colin Ratledge, Bjørn Kristiansen, Cambridge University Press, Cambridge, UK, 359-380, 2006.

Ilyés, H., Karaffa, L., Fekete, É., Karaffa, E., Szentirmai, A., Kubicek, C.: CreA-mediated carbon catabolite repression of [beta]-galactosidase formation in Aspergillus nidulans is growth rate dependent.
FEMS Microbiol. Lett. 235 147-151, 2004.

Karaffa, E., Seiboth, B., Karaffa, L., Fekete, E., Irinyi, L., Kövics, G., Kubicek, C.: Riporter rendszer létrehozása a Trichoderma reesei peptaibol szintetáz expressziójának analíziséhez.
In: 9. Tiszántúli Növényvédelmi Fórum: A szomszédé valóban zöldebb? : a növényvédők első tapasztalatai Magyarországon, mint az EU tagországában: Előadások - Proceedings. Szerk.: Kövics György, Debreceni Egyetem, Debrecen, 232-237, 2004. ISBN: 9639274798

Fekete, E., Karaffa, L., Karaffa, E., Bányai, I., Seiboth, B., Gyémánt, G., Sepsi, A., Szentirmai, A., Kubicek, C.: The alternative D-galactose degrading pathway of Aspergillus nidulans proceeds via L-sorbose.
Arch. Microbiol. 181 (1), 35-44, 2004.

Seidl-Seiboth, V., Seiboth, B., Karaffa, L., Kubicek, C.: The fungal STRE-element-binding protein Seb1 is involved but not essential for glycerol dehydrogenase (gld1) gene expression and glycerol accumulation in Trichoderma atroviride during osmotic stress.
Fungal Genet. Biol. 41 1132-1140, 2004.

Seiboth, B., Hartl, L., Pail, M., Fekete, E., Karaffa, L., Kubicek, C.: The galactokinase of Hypocrea jecorina is essential for cellulase induction by lactose but dispensable for growth on D-galactose.
Mol. Microbiol. 51 (4), 1015-1025, 2004.

Karaffa, L., Kubicek, C.: Aspergillus niger citric acid accumulation: do we understand this well-working black box?.
Appl. Microbiol. Biotechnol. 61 189-196, 2003.

Sámi, L., Karaffa, L., Emri, T., Pócsi, I.: Autolysis and ageing of Penicillium chrysogenum cultures under carbon starvation: respiration and glucose oxidase production.
Acta Microbiol. Immunol. Hung. 50 (1), 67-76, 2003.

Karaffa, E., Fekete, E., Karaffa, L.: Regulation of the cyanide-resistant alternative respiratory pathway in the fungus Acremonium chrysogenum.
Food Technol. Biotechnol. 41 (1), 43-47, 2003.

Karaffa, L., Karaffa, E., Fekete, E., Kozma, J., Szentirmai, A., Pócsi, I.: Stimulation of the cyanide-resistant alternative respiratory pathway by oxygen in Acremonium chrysogenum correlates with the size of the intracellular peroxide pool.
Can. J. Microbiol. 49 (3), 216-220, 2003.

Karaffa, L., Fekete, E., Karaffa, E., Sepsi, A., Seiboth, B., Szentirmai, A., Kubicek, C.: Carbon catabolite repression in the regulation of beta-galactosidase activity in Aspergillus nidulans..
Acta Microbiol. Immunol. Hung. 49 (2/3), 261-265, 2002.

Fekete, E., Karaffa, L., Karaffa, E., Seiboth, B., Biró, S., Szentirmai, A., Kubicek, C.: Regulation of formation of the intracellular β-galactosidase activity of Aspergillus nidulans.
Arch. Microbiol. 179 (1), 7-14, 2002.

Seiboth, B., Karaffa, L., Karaffa, E., Kubicek, C.: The Hypocrea jecorina gal10 (UDP-glucose 4-epimerase-encoding) gene differs from yeast homologues in sequence, genomic organization and expression.
Gene. 295 143-149, 2002.

Karaffa, E., Juhász, A., Szentirmai, A., Karaffa, L.: A metabolikus aktivitás becslése Akridinnarancs fluoreszcens festékkel.
Acta biol. Debr. 22 69-74, 2001.

Karaffa, E., Szentirmai, A., Paul, G., Thomas, C., Pócsi, I., Karaffa, L.: Analysis of the relationship between growth, cephalosporin C production and fragmentation in Acremonium chrysogenum..
Can. J. Microbiol. 47 (9), 801-806, 2001.

Fekete, E., Karaffa, L., Karaffa, E., Seiboth, B., Szentirmai, A., Kubicek, C.: Beta-galactosidase formation in Aspergillus nidulans.
Med. Fac. Landbouww. Univ. Gent 66/3a 285-286, 2001.

Karaffa, L., Váczy, K., Karaffa, E., Biró, S., Szentirmai, A., Pócsi, I.: Cyanide-resistant alternative respiration is strictly correlated to intracellular peroxide levels in Acremonium chrysogenum.
Free Radic. Res. 34 (4), 405-416, 2001.

Karaffa, L., Karaffa, E., Fekete, E., Szentirmai, A.: The biochemistry of citric acid accumulation by Aspergillus niger.
Acta Microbiol. Immunol. Hung. 48 (3/4), 429-441, 2001.

Karaffa, E., Karaffa, L., Paul, G., Pócsi, I., Thomas, C., Szentirmai, A.: Assessment of the metabolic activity of Acremonium chrysogenum using Acridine Orange.
Biotechnol. Lett. 22 693-697, 2000.

Karaffa, L.: Membrane Fermentors.
In: Integration of Membrane Processes into Bioconversions. Ed.: by Katalin Bélafi-Bakó, László Gubicza, Marcel Mulder, Kluywer Academic/Plenum Publishers, New York, NY, U.S.A., 223-229, 2000.

Karaffa, E., Fekete, E., Karaffa, L., Szentirmai, A.: Effect of sulphurcontaining amino acids on the glutathione metabolism and cephalosporin C production of Acremonium chrysogenum.

Karaffa, E., Szentirmai, A., Biró, S., Karaffa, L.: Specific cephalosporin C production of Acremonium chrysogenum is independent of the culture density.
Biotechn. Techn. 13 (7), 443-445, 1999.

Karaffa, L., Karaffa, E., Kozma, J., Kubicek, C., Szentirmai, A.: The role of the alternative respiratory pathway in the stimulation of cephalosporin C formation by soybean oil in Acremonium chrysogenum.
Appl. Microbiol. Biotechnol. 51 633-638, 1999.

Karaffa, E., Pusztahelyi, T., Karaffa, L., Karányi, Z., Pócsi, I., Biró, S., Szentirmai, A., Pócsi, I.: Allosamidin inhibits the fragmentation of Acremonium chrysogenum but does not influence the cephalosporin-C production of the fungus.
FEMS Microbiol. Lett. 164 (2), 231-236, 1998.

Karaffa, E., Karaffa, L., Krahe, M., Märkl, H., Szentirmai, A.: Dializáló membránreaktor alkalmazása nagy sejtsűrűségű Acremonium chrysogenum tenyészet létrehozására.
Membrántechnika 2 3-11, 1998.

Karaffa, L., Karaffa, E., Kozma, J., Szentirmai, A.: Methionine enhances sugar consumption, fragmentation, vacuolation and cephalosporin C production in Acremonium chrysogenum.
Process Biochem. 32 (6), 495-499, 1997.

Karaffa, L., Karaffa, E., Kozma, J., Szentirmai, A.: Cephalosporin C production, morphology and alternative respiration of Acremonium chrysogenum in glucose-limited chemostat.
Biotechnol. Lett. 18 (6), 701-106, 1996.

Kozma, J., Karaffa, L.: Effect of oxygen on the respiratory system and cephalosporin C production in Acremonium chrysogenum.
J. biotechnol. 48 (1/2), 59-66, 1996.

Kozma, J., Karaffa, L.: Estimation of dissolved oxygen in shake-flask.
Hung. j. ind. chem. 24 225-227, 1996.