Patsalos, A., Halász, L., Medina-Serpas, M., Berger, W., Dániel, B., Tzerpos, P., Kiss, M., Nagy, G., Fischer, C., Simándi, Z., Varga, T., Nagy, L.: A growth factor-expressing macrophage subpopulation orchestrates regenerative inflammation via GDF-15.
J. Exp. Med. 219 (1), 1-38, 2022.

Fadel, L., Rehó, B., Volkó, J., Bojcsuk, D., Kolostyák, Z., Nagy, G., Müller, G., Simándi, Z., Hegedűs, É., Szabó, G., Tóth, K., Nagy, L., Vámosi, G.: Agonist binding directs dynamic competition among nuclear receptors for heterodimerization with retinoid X receptor.
J. Biol. Chem. 295 (29), 10045-10061, 2020.

Horváth, A., Dániel, B., Széles, L., Cuaranta-Monroy, I., Czimmerer, Z., Ozgyin, L., Steiner, L., Kiss, M., Simándi, Z., Póliska, S., Giannakis, N., Raineri, E., Gut, I., Nagy, B., Nagy, L.: Labelled regulatory elements are pervasive features of the macrophage genome and are dynamically utilized by classical and alternative polarization signals.
Nucleic Acids Res. 47 (6), 2778-2792, 2019.

Simándi, Z., Pájer, K., Károlyi, K., Sieler, T., Jiang, L., Kolostyák, Z., Sári, Z., Fekecs, Z., Pap, A., Patsalos, A., Contreras, G., Rehó, B., Papp, Z., Guo, X., Horváth, A., Kiss, G., Keresztessy, Z., Vámosi, G., Hickman, J., Xu, H., Dormann, D., Hortobágyi, T., Antal, M., Nógrádi, A., Nagy, L.: Arginine Methyltransferase PRMT8 Provides Cellular Stress Tolerance in Aging Motoneurons.
J. Neurosci. 38 (35), 7683-7700, 2018.

Patsalos, A., Simándi, Z., Hays, T., Peloquin, M., Hajian, M., Restrepo, I., Coen, P., Russell, A., Nagy, L.: In vivo GDF3 administration abrogates aging related muscle regeneration delay following acute sterile injury.
Aging Cell. 17 (5), 1-6, 2018.

Simándi, Z., Horváth, A., Cuaranta-Monroy, I., Sauer, S., Deleuze, J., Nagy, L.: RXR heterodimers orchestrate transcriptional control of neurogenesis and cell fate specification.
Mol. Cell. Endocrinol. 471 51-62, 2018.

Czimmerer, Z., Dániel, B., Horváth, A., Rückerl, D., Nagy, G., Kiss, M., Peloquin, M., Budai, M., Cuaranta-Monroy, I., Simándi, Z., Steiner, L., Nagy, B., Póliska, S., Bankó, C., Bacsó, Z., Schulman, I., Sauer, S., Deleuze, J., Allen, J., Benkő, S., Nagy, L.: The Transcription Factor STAT6 Mediates Direct Repression of Inflammatory Enhancers and Limits Activation of Alternatively Polarized Macrophages.
Immunity. 48 (1), 75-90, 2018.

Horváth, A., Simándi, Z., Nagy, L.: Commentaries on Viewpoint: Loopomics: a new functional approach to life.
J. Appl. Physiol. 123 (4), 1014-1015, 2017.

Imre, L., Simándi, Z., Horváth, A., Fenyőfalvi, G., Nánási, P., Firouzi Niaki, E., Hegedűs, É., Bacsó, Z., Weyemi, U., Mauser, R., Ausio, J., Jeltsch, A., Bonner, W., Nagy, L., Kimura, H., Szabó, G.: Nucleosome stability measured in situ by automated quantitative imaging.
Sci Rep. 7 (1), 1-15, 2017.

Simándi, Z., Horváth, A., Wright, L., Cuaranta-Monroy, I., De, L., Károlyi, K., Sauer, S., Deleuze, J., Gudas, L., Cowley, S., Nagy, L.: OCT4 Acts as an Integrator of Pluripotency and Signal-Induced Differentiation.
Mol. Cell. 63 (4), 647-661, 2016.

Simándi, Z., Horváth, A., Nagy, P., Nagy, L.: Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation.
JoVE. 2016 (112), e53978, 2016.

Cuaranta-Monroy, I., Simándi, Z., Nagy, L.: Differentiation of Adipocytes in Monolayer from Mouse Embryonic Stem Cells.
Methods Mol. Biol. 1340 407-415, 2015.

Cuaranta-Monroy, I., Kiss, M., Simándi, Z., Nagy, L.: Genomewide effects of peroxisome proliferatoractivated receptor gamma in macrophages and dendritic cells: revealing complexity through systems biology.
Eur. J. Clin. Invest. 45 964-975, 2015.

Simándi, Z., Czipa, E., Horváth, A., Kőszeghy, Á., Bordás, C., Póliska, S., Juhász, I., Imre, L., Szabó, G., Dezső, B., Barta, E., Sauer, S., Károlyi, K., Kovács, I., Hutóczki, G., Bognár, L., Klekner, Á., Szűcs, P., Bálint, B., Nagy, L.: PRMT1 and PRMT8 regulate retinoic acid-dependent neuronal differentiation with implications to neuropathology.
Stem Cells. 33 (3), 726-741, 2015.

Cuaranta-Monroy, I., Simándi, Z., Kolostyák, Z., Doan-Xuan, Q., Póliska, S., Horváth, A., Nagy, G., Bacsó, Z., Nagy, L.: Highly efficient differentiation of embryonic stem cells into adipocytes by ascorbic acid.
Stem Cell Res. 13 (1), 88-97, 2014.

Czimmerer, Z., Hulvely, J., Simándi, Z., Varallyay, É., Havelda, Z., Szabó, E., Varga, A., Dezső, B., Balogh, M., Horváth, A., Domokos, B., Török, Z., Nagy, L., Bálint, B.: A versatile method to design stem-loop primer-based quantitative PCR assays for detecting small regulatory RNA molecules.
PLoS One. 8 (1), 1-10, 2013.

Simándi, Z., Cuaranta-Monroy, I., Nagy, L.: Nuclear receptors as regulators of stem cell and cancer stem cell metabolism.
Semin. Cell Dev. Biol. 24 (10-12), 716-723, 2013.

Simándi, Z., Nagy, L.: Retinoid signaling is a context-dependent regulator of embryonic stem cells.
In: Embryonic Stem Cells - Differentiation and Pluripotent Alternatives. Eds.: Michael S. Kallos, InTech - Open Access Publisher, Rijeka, 55-78, 2011. ISBN: 9789533076324

Simándi, Z., Bálint, B., Póliska, S., Rühl, R., Nagy, L.: Activation of retinoic acid receptor signaling coordinates lineage commitment of spontaneously differentiating mouse embryonic stem cells in embryoid bodies.
FEBS Lett. 584 (14), 3123-3130, 2010.