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Nagy Gergely

Nagy Gergely

Nagy Gergely

Publication list

Uploaded publications:
25
Publications in DEA:
25
OA:
16
Date range:
2010-2023
2023
2022
  1. Patsalos, A., Halász, L., Medina-Serpas, M., Berger, W., Dániel, B., Tzerpos, P., Kiss, M., Nagy, G., Fischer, C., Simándi, Z., Varga, T., Nagy, L.: A growth factor-expressing macrophage subpopulation orchestrates regenerative inflammation via GDF-15.
    J. Exp. Med. 219 (1), 1-38, 2022.
    Journal metrics:
    D1 Immunology
    D1 Immunology and Allergy
    D1 Medicine (miscellaneous)
  2. Göczi, L., Csumita, M., Horváth, A., Nagy, G., Póliska, S., Pigni, M., Thelemann, C., Dániel, B., Mianesaz, H., Varga, T., Sen, K., Raghav, S., Schoggins, J., Nagy, L., Acha-Orbea, H., Meissner, F., Reith, W., Széles, L.: A Multi-Omics Approach Reveals Features That Permit Robust and Widespread Regulation of IFN-Inducible Antiviral Effectors.
    J. Immun. 209 (10), 1930-1941, 2022.
    Journal metrics:
    Q1 Immunology
    Q1 Immunology and Allergy
2020
  1. Fadel, L., Rehó, B., Volkó, J., Bojcsuk, D., Kolostyák, Z., Nagy, G., Müller, G., Simándi, Z., Hegedűs, É., Szabó, G., Tóth, K., Nagy, L., Vámosi, G.: Agonist binding directs dynamic competition among nuclear receptors for heterodimerization with retinoid X receptor.
    J. Biol. Chem. 295 (29), 10045-10061, 2020.
    Journal metrics:
    D1 Biochemistry
    Q1 Cell Biology
    Q1 Molecular Biology
  2. Bojcsuk, D., Nagy, G., Bálint, B.: Alternatively Constructed Estrogen Receptor Alpha-Driven Super-Enhancers Result in Similar Gene Expression in Breast and Endometrial Cell Lines.
    Int. J. Mol. Sci. 21 1-18, 2020.
    Journal metrics:
    Q2 Catalysis
    D1 Computer Science Applications
    D1 Inorganic Chemistry
    Q1 Medicine (miscellaneous)
    Q2 Molecular Biology
    D1 Organic Chemistry
    D1 Physical and Theoretical Chemistry
    D1 Spectroscopy
  3. Nagy, G., Nagy, L.: Motif grammar: the basis of the language of gene expression.
    Computational and Structural Biotechnology Journal. 18 2026-2032, 2020.
    Journal metrics:
    Q1 Biochemistry
    D1 Biophysics
    D1 Biotechnology
    D1 Computer Science Applications
    Q1 Genetics
    Q2 Structural Biology
  4. Dániel, B., Czimmerer, Z., Halász, L., Botó, P., Kolostyák, Z., Póliska, S., Berger, W., Tzerpos, P., Nagy, G., Horváth, A., Hajas, G., Silye-Cseh, T., Nagy, A., Sauer, S., Francois-Deleuze, J., Szatmári, I., Bácsi, A., Nagy, L.: The transcription factor EGR2 is the molecular linchpin connecting STAT6 activation to the late, stable epigenomic program of alternative macrophage polarization.
    Genes Dev. 34 (21-22), 1474-1492, 2020.
    Journal metrics:
    D1 Developmental Biology
    D1 Genetics
  5. Nagy, G., Dániel, B., Cuaranta-Monroy, I., Nagy, L.: Unraveling the Hierarchy of cis and trans Factors That Determine the DNA Binding by Peroxisome Proliferator-Activated Receptor γ.
    Mol. Cell. Biol. 40 (7), 1-20, 2020.
    Journal metrics:
    Q1 Cell Biology
    Q1 Molecular Biology
2019
  1. Patsalos, A., Tzerpos, P., Halász, L., Nagy, G., Pap, A., Giannakis, N., Lyroni, K., Koliaraki, V., Pintye, É., Dezső, B., Kollias, G., Spilianakis, C., Nagy, L.: The BACH1-HMOX1 Regulatory Axis Is Indispensable for Proper Macrophage Subtype Specification and Skeletal Muscle Regeneration.
    J. Immunol. 203 (6), 1532-1547, 2019.
    Journal metrics:
    Q1 Immunology
    Q1 Immunology and Allergy
2018
  1. Czimmerer, Z., Horváth, A., Dániel, B., Nagy, G., Cuaranta-Monroy, I., Kiss, M., Kolostyák, Z., Póliska, S., Steiner, L., Giannakis, N., Varga, T., Nagy, L.: Dynamic transcriptional control of macrophage miRNA signature via inflammation responsive enhancers revealed using a combination of next generation sequencing-based approaches.
    Biochim. Biophys. Acta. Gene Regul. Mech. 1861 (1), 14-28, 2018.
    Journal metrics:
    D1 Biochemistry
    D1 Biophysics
    Q1 Genetics
    Q1 Molecular Biology
    Q1 Structural Biology
  2. Czimmerer, Z., Nagy, Z., Nagy, G., Horváth, A., Silye-Cseh, T., Kriston, Á., Jonás, D., Sauer, S., Steiner, L., Dániel, B., Deleuze, J., Nagy, L.: Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages.
    Mol. Cell. Endocrinol. 471 63-74, 2018.
    Journal metrics:
    Q1 Biochemistry
    Q1 Endocrinology
    Q2 Molecular Biology
  3. Dániel, B., Nagy, G., Horváth, A., Czimmerer, Z., Cuaranta-Monroy, I., Póliska, S., Hays, T., Sauer, S., Francois-Deleuze, J., Nagy, L.: The IL-4/STAT6/PPAR[gamma] signaling axis is driving the expansion of the RXR heterodimer cistrome, providing complex ligand responsiveness in macrophages.
    Nucleic Acids Res. 46 (9), 4425-4439, 2018.
    Journal metrics:
    D1 Genetics
  4. Dániel, B., Nagy, G., Czimmerer, Z., Horváth, A., Hammers, D., Cuaranta-Monroy, I., Póliska, S., Tzerpos, P., Kolostyák, Z., Hays, T., Patsalos, A., Houtman, R., Sauer, S., Francois-Deleuze, J., Rastinejad, F., Bálint, B., Sweeney, H., Nagy, L.: The Nuclear Receptor PPAR[gamma] Controls Progressive Macrophage Polarization as a Ligand-Insensitive Epigenomic Ratchet of Transcriptional Memory.
    Immunity. 49 (4), 615-626, 2018.
    Journal metrics:
    D1 Immunology
    D1 Immunology and Allergy
    D1 Infectious Diseases
  5. Czimmerer, Z., Dániel, B., Horváth, A., Rückerl, D., Nagy, G., Kiss, M., Peloquin, M., Budai, M., Cuaranta-Monroy, I., Simándi, Z., Steiner, L., Nagy, B., Póliska, S., Bankó, C., Bacsó, Z., Schulman, I., Sauer, S., Deleuze, J., Allen, J., Benkő, S., Nagy, L.: The Transcription Factor STAT6 Mediates Direct Repression of Inflammatory Enhancers and Limits Activation of Alternatively Polarized Macrophages.
    Immunity. 48 (1), 75-90, 2018.
    Journal metrics:
    D1 Immunology
    D1 Immunology and Allergy
    D1 Infectious Diseases
2017
  1. Kiss, M., Czimmerer, Z., Nagy, G., Bieniasz-Krzywiec, P., Ehling, M., Pap, A., Póliska, S., Botó, P., Tzerpos, P., Horváth, A., Kolostyák, Z., Dániel, B., Szatmári, I., Mazzone, M., Nagy, L.: Retinoid X receptor suppresses a metastasis-promoting transcriptional program in myeloid cells via a ligand-insensitive mechanism.
    Proc. Natl. Acad. Sci. U. S. A. 114 (40), 10725-10730, 2017.
    Journal metrics:
    D1 Multidisciplinary
2016
  1. Varga, T., Mounier, R., Patsalos, A., Gogolák, P., Peloquin, M., Horváth, A., Pap, A., Dániel, B., Nagy, G., Pintye, É., Póliska, S., Cuvellier, S., Ben Larbi, S., Sansbury, B., Spite, M., Brown, C., Chazaud, B., Nagy, L.: Macrophage PPAR[gamma], a Lipid Activated Transcription Factor Controls the Growth Factor GDF3 and Skeletal Muscle Regeneration.
    Immunity. 45 (5), 1038-1051, 2016.
    Journal metrics:
    D1 Immunology
    D1 Immunology and Allergy
    D1 Infectious Diseases
  2. Nagy, G., Czipa, E., Steiner, L., Nagy, T., Pongor, S., Nagy, L., Barta, E.: Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA.
    BMC Genomics. 17 (637), 1-9, 2016.
    Journal metrics:
    D1 Biotechnology
    Q1 Genetics
  3. Czimmerer, Z., Varga, T., Kiss, M., Vázquez, C., Doan-Xuan, Q., Rückerl, D., Tattikota, S., Yan, X., Nagy, Z., Dániel, B., Póliska, S., Horváth, A., Nagy, G., Varallyay, É., Poy, M., Allen, J., Bacsó, Z., Abreu-Goodger, C., Nagy, L.: The IL-4/STAT6 signaling axis establishes a conserved microRNA signature in human and mouse macrophages regulating cell survival via miR-342-3p.
    Genome Med. 8 (1), 1-22, 2016.
    Journal metrics:
    D1 Genetics
    D1 Genetics (clinical)
    D1 Molecular Biology
    D1 Molecular Medicine
2014
  1. Cuaranta-Monroy, I., Simándi, Z., Kolostyák, Z., Doan-Xuan, Q., Póliska, S., Horváth, A., Nagy, G., Bacsó, Z., Nagy, L.: Highly efficient differentiation of embryonic stem cells into adipocytes by ascorbic acid.
    Stem Cell Res. 13 (1), 88-97, 2014.
    Journal metrics:
    Q2 Cell Biology
    Q2 Developmental Biology
    D1 Medicine (miscellaneous)
  2. Dániel, B., Nagy, G., Hah, N., Horváth, A., Czimmerer, Z., Póliska, S., Gyuris, T., Keirsse, J., Gysemans, C., Van Ginderachter, J., Bálint, B., Evans, R., Barta, E., Nagy, L.: The active enhancer network operated by liganded RXR supports angiogenic activity in macrophages.
    Genes Dev. 28 (14), 1562-1577, 2014.
    Journal metrics:
    D1 Developmental Biology
    D1 Genetics
  3. Dániel, B., Nagy, G., Nagy, L.: The intriguing complexities of mammalian gene regulation: how to link enhancers to regulated genes. Are we there yet?.
    FEBS Lett. 588 (15), 2379-2391, 2014.
    Journal metrics:
    Q1 Biochemistry
    D1 Biophysics
    Q2 Cell Biology
    Q1 Genetics
    Q2 Molecular Biology
    Q2 Structural Biology
2013
  1. Nagy, G., Dániel, B., Jonás, D., Nagy, L., Barta, E.: A novel method to predict regulatory regions based on histone mark landscapes in macrophages.
    Immunobiology. 218 (11), 1416-1427, 2013.
    Journal metrics:
    Q1 Hematology
    Q2 Immunology
    Q1 Immunology and Allergy
2010
  1. Széles, L., Póliska, S., Nagy, G., Szatmári, I., Szántó, A., Pap, A., Lindstedt, M., Santegoets, S., Rühl, R., Dezső, B., Nagy, L.: Research resource: transcriptome profiling of genes regulated by RXR and its permissive and nonpermissive partners in differentiating monocyte-derived dendritic cells.
    Mol. Endocrinol. 24 (11), 2218-2231, 2010.
    Journal metrics:
    D1 Endocrinology
    D1 Medicine (miscellaneous)
    Q1 Molecular Biology
updated: 2024-04-14, 01:23

SCImago quartiles of
scientific journal articles

Number of scientific articles: 25
Q1/D1 19 (76%)
Q1 25 (100%)
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SCImago subject areas and categories

Biochemistry, Genetics and Molecular Biology (16)
Genetics (10)
Molecular Biology (8)
Biochemistry (5)
Cell Biology (4)
Biophysics (3)
Developmental Biology (3)
Structural Biology (3)
Biotechnology (2)
Endocrinology (2)
Molecular Medicine (1)
Medicine (12)
Immunology and Allergy (8)
Medicine (miscellaneous) (4)
Infectious Diseases (3)
Genetics (clinical) (1)
Hematology (1)
Immunology and Microbiology (8)
Immunology (8)
Computer Science (2)
Computer Science Applications (2)
Chemical Engineering (1)
Catalysis (1)
Chemistry (1)
Inorganic Chemistry (1)
Organic Chemistry (1)
Physical and Theoretical Chemistry (1)
Spectroscopy (1)
Multidisciplinary (1)
Multidisciplinary (1)

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Year chart

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iDEa co-authors

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Other co-authors

Cuaranta-Monroy, Ixchelt
Kolostyák Zsuzsanna
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Cuaranta-Monroy, Ixchelt
Kolostyák Zsuzsanna
Francois-Deleuze, Jean
Deleuze, Jean-Francois
Bieniasz-Krzywiec, Pawel
Chazaud, Bénédicte
Mazzone, Massimiliano
Medina-Serpas, Miguel A.
Rastinejad, Fraydoon
Santegoets, Saskia J. A. M.
Spilianakis, Charalampos G.
Szebeni Gábor János
Tattikota, Sudhir Gopal
Thelemann, Christoph
Van Ginderachter, Jo A.
Vázquez, Cesaré Ovando