Flipphi, M., Harispe, M., Hamari, Z., Kocsubé, S., Scazzocchio, C., Ramón, A.: An ascomycete H4 variant with an unknown function.
R. Soc. Open Sci. 11 (2), 1-16, 2024.

Karaffa, E., Kovács, C., Karaffa, L., Csótó, A.: Endophytic Trichoderma strains open new perspectives for fungi biocontrol.
In: 29. Tiszántúli Növényvédelmi Fórum / 11th International Plant Protection Symposium at University of Debrecen: Program - Programme. Szerk.: Tarcali Gábor, Kövics György János, Debreceni Egyetem, MÉK Növényvédelmi Intézet, Debrecen, 25-26, 2024.

Fekete, E., Bíró, V., Márton, A., Bakondi-Kovács, I., Karaffa, E., Kovács, B., Geoffrion, N., Tsang, A., Kubicek, C., Karaffa, L.: Transcriptomics identify the triggering of citrate export as the key event caused by manganese deficiency in.
Microbiol. Spectr. - 1-18, 2024.

Zabiák, A., Kovács, C., Takács, F., Pál, K., Peles, F., Fekete, E., Karaffa, L., Mihály, K., Flipphi, M., Karaffa, E.: Diaporthe and Diplodia species associated with walnut (Juglans regia L.) in Hungarian orchards.
Horticulturae. 9 (2), 1-15, 2023.

Tóth, B., Grusak, M., Maryke, L., Guzmán, C., Szőke, L., Kaczur, D., Harangi, R., Kovács, B., Radócz, L., Makhsatova, S., Danter, M., Nagy, J., Moloi, M.: Evaluation of the Impacts of Stressors on Crops in the Context of Climate Change.
In: Proceedings Zbornik INSORE 2023 / Kristina Kljak, Klaudija Carović-Stanko, University of Zagreb Faculty of Agriculture, Zagreb, 33, 2023. ISBN: 9789538276422

Flipphi, M., Márton, A., Bíró, V., Ág, N., Karaffa, E., Fekete, E., Karaffa, L.: Generation, Transfer, and Loss of Alternative Oxidase Paralogues in the Aspergillaceae Family.
J. Fungi. 9 (12), 1-18, 2023.

Csótó, A., Nagy, A., Laurinyecz, N., Nagy, Z., Németh, C., Németh, E., Csikászné Krizsics, A., Rakonczás, N., Fontaine, F., Fekete, E., Flipphi, M., Karaffa, L., Karaffa, E.: Hybrid Vitis Cultivars with American or Asian Ancestries Show Higher Tolerance towards Grapevine Trunk Diseases.
Plants-Basel. 12 (12), 1-16, 2023.

Reinfurt, A., Fritsche, S., Bíró, V., Márton, A., Ellena, V., Fekete, E., Karaffa, E., Karaffa, L., Steiger, M.: Manganese(II) ions suppress the transcription of the citrate exporter encoding gene cexA in Aspergillus niger.
Front. Bioeng. Biotechnol. 11 1-11, 2023.

Flipphi, M., Márton, A., Bíró, V., Ág, N., Karaffa, E., Fekete, E., Karaffa, L.: Mutations in the Second Alternative Oxidase Gene: A New Approach to Group Aspergillus niger Strains.
J. Fungi. 9 (5), 1-17, 2023.

Csótó, A., Kovács, C., Pál, K., Nagy, A., Peles, F., Fekete, E., Karaffa, L., Kubicek, C., Karaffa, E.: The Biocontrol Potential of Endophytic Trichoderma Fungi Isolated from Hungarian Grapevines, Part II, Grapevine Stimulation.
Pathogens. 12 (1), 1-14, 2023.

Bokor, E., Ámon, J., Varga, M., Szekeres, A., Hegedűs, Z., Jakusch, T., Szakonyi, Z., Flipphi, M., Vágvölgyi, C., Gácser, A., Scazzocchio, C., Hamari, Z.: A complete nicotinate degradation pathway in the microbial eukaryote Aspergillus nidulans.
Commun. Biol. 5 (1), 1-11, 2022.

Fekete, E., Bíró, V., Márton, A., Bakondi-Kovács, I., Németh, Z., Karaffa, E., Kovács, B., Fábián, I., Kubicek, C., Tsang, A., Karaffa, L.: Bioreactor as the root cause of the "manganese effect" during Aspergillus niger citric acid fermentations.
Front. Bioeng. Biotechnol. 10 1-12, 2022.

Kovács, C., Csótó, A., Pál, K., Nagy, A., Fekete, E., Karaffa, L., Kubicek, C., Karaffa, E.: Endophytic Trichoderma spp. from Hungarian grapevines with biocontrol potential.
In: 16th Congress of the Mediterranean Phytopathological Union : Book of abstracts, [s.n.], [s.l.], 1, 2022.

B-Béres, V., Kókai, Z., Várbíró, G., Mustazhapova, G., Csabai, Z., Pernecker, B., Borics, G., Bácsi, I., Boda, P.: Flow Intermittence Drives the Benthic Algal Composition, Biodiversity and Diatom-Based Quality of Small Hilly Streams in the Pannonian Ecoregion, Hungary.
Front. Ecol. Evol. 10 1-12, 2022.

Meng, J., Németh, Z., Peng, M., Fekete, E., Garrigues, S., Lipzen, A., Ng, V., Savage, E., Zhang, Y., Grigoriev, I., Mäkelä, M., Karaffa, L., De Vries, R.: GalR, GalX and AraR co-regulate D-galactose and L-arabinose utilization in Aspergillus nidulans.
Microbial Biotechnology. 15 (6), 1839-1851, 2022.

Fodor, A., Gualtieri, M., Zeller, M., Tarasco, E., Klein, M., Fodor, A., Haynes, L., Lengyel, K., Forst, S., Furgani, G., Karaffa, L., Vellai, T.: Type Strains of Entomopathogenic Nematode-Symbiotic Bacterium Species, Xenorhabdus szentirmaii (EMC) and X. budapestensis (EMA), Are Exceptional Sources of Non-Ribosomal Templated, Large-Target-Spectral, Thermotolerant-Antimicrobial Peptides (by Both), and Iodinin (by EMC).
Pathogens. 11 (3), 1-29, 2022.

Fekete, E., Pénzes, F., Ág, N., Ág-Rácz, V., Karaffa, E., Scazzocchio, C., Flipphi, M., Karaffa, L.: Unique and Repeated Stwintrons (Spliceosomal Twin Introns) in the Hypoxylaceae.
J. Fungi. 8 (4), 1-23, 2022.

Karaffa, E., Kolláth, I., Fekete, E., Bíró, V., Flipphi, M., Kovács, B., Kubicek, C., Karaffa, L.: Carbon-source dependent interplay of copper and manganese ions modulates the morphology and itaconic acid production in Aspergillus terreus.
Front. Microbiol. 12 1-14, 2021.

Fekete, E., Pénzes, F., Ág, N., Scazzocchio, C., Flipphi, M., Karaffa, L.: Internally Symmetrical Stwintrons and Related Canonical Introns in Hypoxylaceae Species.
J. Fungi. 7 1-21, 2021.

Kovács, C., Csótó, A., Pál, K., Nagy, A., Fekete, E., Karaffa, L., Kubicek, C., Karaffa, E.: The Biocontrol Potential of Endophytic Trichoderma Fungi Isolated from Hungarian Grapevines. Part I. Isolation, Identification and In Vitro Studies.
Pathogens. 10 (12), 1-19, 2021.

Karaffa, L., Fekete, E., Kubicek, C.: The role of metal ions in fungal organic acid accumulation.
Microorganisms. 9 (6), 1-16, 2021.

Ág, N., Kavalecz, N., Pénzes, F., Karaffa, L., Scazzocchio, C., Flipphi, M., Fekete, E.: Complex intron generation in the yeast genus Lipomyces.
Sci. Rep. 10 1-10, 2020.

Fejes, B., Ouedraogo, J., Fekete, E., Karaffa, E., Flipphi, M., Soós, Á., Molnár, Á., Kovács, B., Kubicek, C., Tsang, A., Karaffa, L.: The effects of external Mn2+ concentration on hyphal morphology and citric acid production are mediated primarily by the NRAMP-family transporter DmtA in Aspergillus niger.
Microb Cell Fact. 19 (1), 1-11, 2020.

Kavalecz, N., Ág, N., Karaffa, L., Scazzocchio, C., Flipphi, M., Fekete, E.: A spliceosomal twin intron (stwintron) participates in both exon skipping and evolutionary exon loss.
Sci. Rep. 9 (1), 1-11, 2019.

Karaffa, L., Kubicek, C.: Citric acid and itaconic acid accumulation: variations of the same story?.
Appl. Microbiol. Biotechnol. 103 (7), 2889-2902, 2019.

Németh, Z., Kulcsár, L., Flipphi, M., Orosz, A., Aguilar-Pontes, M., De Vries, R., Karaffa, L., Fekete, E.: L-Arabinose induces D-galactose catabolism via the Leloir pathway in Aspergillus nidulans.
Fungal Genet. Biol. 123 53-59, 2019.

Kolláth, I., Molnár, Á., Soós, Á., Fekete, E., Karaffa, E., Kovács, B., Kubicek, C., Karaffa, L.: Manganese Deficiency Is Required for High Itaconic Acid Production From D-Xylose in Aspergillus terreus.
Front. Microbiol. 10 1-10, 2019.

Molnár, Á., Németh, Z., Fekete, E., Flipphi, M., Keller, N., Karaffa, L.: Analysis of the relationship between alternative respiration and sterigmatocystin formation in Aspergillus nidulans.
Toxins. 10 (4), 168, 2018.

Karaffa, L., Molnár, Á., Kolláth, I., Kovács, B., Soós, Á., Kubicek, C., Fekete, E.: Aspergillus terreus itaconic acid fermentation technology reflects the physiological requirements of overflow metabolism.
In: 11th International Mycological Congress: Mycological Discoveries for a Better World : Abstract Book, Ana G. Méndez University, San Juan, Puerto Rico, 355-356, 2018.

Kolláth, I., Fekete, E., Karaffa, E., Soós, Á., Kovács, B., Karaffa, L.: Effect of copper (Il) ions on itaconic acid prodoction by Aspergilius terreus.
In: VII. Interdiszciplináris Doktorandusz Konferencia 2018 absztraktkötet. Szerk.: Bódog Ferenc, Pécsi Tudományegyetem Doktorandusz Önkormányzat, Pécs, 74, 2018. ISBN: 9789634292104

Molnár, Á., Németh, Z., Kolláth, I., Fekete, E., Flipphi, M., Ág, N., Soós, Á., Kovács, B., Karaffa, E., Kubicek, C., Karaffa, L.: High oxygen tension increases itaconic acid accumulation, glucose consumption, and the expression and activity of alternative oxidase in Aspergillus terreus.
Appl. Microbiol. Biotechnol. 102 (20), 8799-8808, 2018.

Kavalecz, N., Flipphi, M., Ág, N., Karaffa, L., Scazzocchio, C., Fekete, E.: The first instance of a lariat branch point motif-interrupted spliceosomal twin intron in Aspergilius nidulans.
In: VII. Interdiszciplináris Doktorandusz Konferencia 2018 absztraktkötet. Szerk.: Bódog Ferenc, Pécsi Tudományegyetem Doktorandusz Önkormányzat, Pécs, 73, 2018. ISBN: 9789634292104

Fekete, E., Flipphi, M., Ág, N., Kavalecz, N., Cerqueira, G., Scazzocchio, C., Karaffa, L.: A mechanism for a single nucleotide intron shift.
Nucleic Acids Res. 45 (15), 9085-9092, 2017.

De Vries, R., Riley, R., Wiebenga, A., Aguilar-Osorio, G., Amillis, S., Akemi Uchima, C., Anderluh, G., Asadollahi, M., Askin, M., Barry, K., Battaglia, E., Bayram, Ö., Benocci, T., Braus-Stromeyer, S., Caldana, C., Cánovas, D., Cerqueira, G., Chen, F., Chen, W., Choi, C., Clum, A., Corrêa dos, S., Lima Damásio, A., Diallinas, G., Emri, T., Fekete, E., Flipphi, M., Freyberg, S., Gallo,, A., Gournas, C., Habgood, R., Hainaut, M., Harispe, M., Henrissat, B., Hildén, K., Hope, R., Hossain, A., Karabika, E., Karaffa, L., Karányi, Z., Kraševec, N., Kuo, A., Kusch, H., LaButti, K., Lagendijk, E., Lapidus, A., Levasseur, A., Lindquist, E., Lipzen, A., Logrieco, A., MacCabe, A., Mäkelä, M., Malavazi, I., Melin, P., Meyer, V., Mielnichuk, N., Miskei, M., Molnár, Á., Mulé, G., Ngan, C., Orejas, M., Orosz, E., Ouedraogo, J., Overkamp, K., Park, H., Perrone, G., Piumi, F., Punt, P., Ram, A., Ramón, A., Rauscher, S., Record, E., Riaño-Pachón, D., Robert, V., Röhrig, J., Ruller, R., Salamov, A., Salih, N., Samson, R., Karaffa, E., Sanguinetti, M., Schütze, T., Sepčić, K., Shelest, E., Sherlock, G., Sophianopoulou, V., Squina, F., Sun, H., Susca, A., Todd, R., Tsang, A., Unkles, S., Wiele, N., Rossen-Uffink, D., Velasco de, C., Vesth, T., Visser, J., Yu, J., Zhou, M., Andersen, M., Archer, D., Baker, S., Benoit, I., Brakhage, A., Braus, G., Fischer, R., Frisvad, J., Goldman, G., Houbraken, J., Oakley, B., Pócsi, I., Scazzocchio, C., Seiboth, B., Kuyk, P., Wortman, J., Dyer, P., Grigoriev, I.: Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.
Genome Biol. 18 (28), 1-45, 2017.

Flipphi, M., Ág, N., Karaffa, L., Kavalecz, N., Cerqueira, G., Scazzocchio, C., Fekete, E.: Emergence and loss of spliceosomal twin introns.
Fungal Biol Biotechnol. 4 (1), 7, 2017.

Kulcsár, L., Flipphi, M., Jónás, Á., Karaffa, E., Fekete, E., Karaffa, L.: Identification of a mutarotase gene involved in D-galactose utilization in Aspergillus nidulans.
FEMS Microbiol. Lett. 364 1-7, 2017.

Kolláth, I., Molnár, Á., Fekete, E., Karaffa, E., Soós, Á., Kovács, B., Kubicek, C., Karaffa, L.: Production of itaconic acid from D-xylose by Aspergillus terreus.
In: 2nd Symposium on Plant Biomass Conversation by Fungi, Westerdijk Fungal Biodiversity Institute, Utrecht, Hollandia, 25, 2017.

Kolláth, I., Molnár, Á., Fekete, E., Karaffa, E., Soós, Á., Kovács, B., Kubicek, C., Karaffa, L.: Production of itaconic acid from D-xylose by Aspergillus terreus.
In: Abstracts of the 5th Central European Forum for Microbiology. Ed.: K. Márialigeti, O. Dobay, Akadémiai Kiadó, Budapest, 136, 2017, (Acta Microbiologica et Immunologica Hungarica, ISSN 1217-8950 ; 64. (Suppl))

Fekete, E., Orosz, A., Kulcsár, L., Kavalecz, N., Flipphi, M., Karaffa, L.: Characterization of a second physiologically relevant lactose permease gene (lacpB) in Aspergillus nidulans.
Microbiology (Reading, Engl.). 162 837-847, 2016.

Jónás, Á., Fekete, E., Németh, Z., Flipphi, M., Karaffa, L.: D-Galactose catabolism in Penicillium chrysogenum: Expression analysis of the structural genes of the Leloir pathway.
Acta Biol. Hung. 67 (3), 318-332, 2016.

Németh, Z., Molnár, Á., Fejes, B., Novák, L., Karaffa, L., Keller, N., Fekete, E.: Growth-phase sterigmatocystin formation on lactose is mediated via low specific growth rates in Aspergillus nidulans.
Toxins. 8 (12), 354, 2016.

Papp, B., Török, T., Karaffa, E., Fekete, E., Flipphi, M., Karaffa, L.: High cell density cultivation of the chemolithoautotrophic bacterium Nitrosomonas europaea.
Folia Microbiol. 99 (19), 7937-7944, 2016.

Karaffa, L., Diaz, R., Papp, B., Fekete, E., Karaffa, E., Kubicek, C.: A deficiency of manganese ions in the presence of high sugar 5 concentrations is the critical parameter for achieving high yields 6 of itaconic acid by Aspergillus terreus.
Appl. Microbiol. Biotechnol. 99 (19), 7937-7944, 2015.

Ág, N., Flipphi, M., Karaffa, L., Scazzocchio, C., Fekete, E.: Alternatively spliced, spliceosomal twin introns in Helminthosporium solani.
Fungal Genet. Biol. 85 7-13, 2015.

Jónás, Á., Fekete, E., Flipphi, M., Karaffa, E., Jäger, S., Molnár, Á., Szentirmai, A., Karaffa, L.: Extra- and intracellular lactose catabolism in Penicillium chrysogenum: phylogenetic and expression analysis of the putative permease and hydrolase genes.
J. Antibiot. 67 489-497, 2014.

Orosz, A., Fekete, E., Flipphi, M., Karaffa, L.: Metabolism of D-galactose is dispensable for the induction of the beta-galactosidase- (bgaD) and lactose permease (lacpA) genes in Aspergillus nidulans.
FEMS Microbiol. Lett. 359 (1), 19-25, 2014.

Fekete, E., Karaffa, L., Karimi Aghcheh, R., Németh, Z., Fekete, É., Orosz, A., Paholcsek, M., Stágel, A., Kubicek, C.: The transcriptome of lae1 mutants of Trichoderma reesei cultivated at constant growth rates reveals new targets of LAE1 function.
BMC Genomics. 15 447-1 - 447-10, 2014.

Karimi Aghcheh, R., Németh, Z., Atanasova, L., Fekete, E., Paholcsek, M., Karaffa, E., Aquino, B., Druzhinina, I., Karaffa, L., Kubicek, C.: The VELVET A orthologue VEL1 of Trichoderma reesei regulates fungal development and is essential for cellulase gene expression.
PLoS One. 9 (11), e112799-1 - e112799-10, 2014.

Asadollahi, M., Fekete, E., Karaffa, L., Flipphi, M., Árnyasi, M., Esmaeili, M., Váczy, K., Karaffa, E.: Comparison of Botrytis cinerea populations isolated from two open-field cultivated host plants.
Microbiol. Res. 168 379-388, 2013.

Asadollahi, M., Bérczesné Szojka, A., Fekete, E., Karaffa, L., Takács, F., Flipphi, M., Karaffa, E.: Resistance to QoI Fungicide and Cytochrome b Diversity in the Hungarian Botrytis cinerea Population.
J. Agric. Sci. Technol. 15 397-407, 2013.

Flipphi, M., Fekete, E., Ág, N., Scazzocchio, C., Karaffa, L.: Spliceosome twin introns in fungal nuclear transcripts.
Fungal Genet. Biol. 57 48-57, 2013.

Karaffa, L., Coulier, L., Fekete, E., Overkamp, K., Druzhinina, I., Mikus, M., Seiboth, B., Novák, L., Punt, P., Kubicek, C.: The intracellular galactoglycome in Trichoderma reesei during growth on lactose.
Appl. Microbiol. Biotechnol. 97 (12), 5447-5456, 2013.

Kiss, L., Bereczky, Z., Kassainé Jáger, E., Kovács, M., Batta, G., Deák, T., Fekete, E., Fekete, É., Váczy, Z., Váczy, K., Bisztray, G., Boróczky, G., Csikászné Krizsics, A., Holb, I., Kaptás, T., Karaffa, L., Kocsis, M., Kozma, P., Mukli, D., Schmidt, Á., Sipiczki, M., Tégla, Z.: A strobilurin-rezisztencia molekuláris markere Széles körben elterjedt a hazai szőlő-, Alma- és paprikalisztharmat-populációkban.
Növényvédelem. 48 (11), 489-499, 2012.

Fekete, E., De Vries, R., Seiboth, B., Kuyk, P., Karaffa, E., Fekete, É., Metz, B., Kubicek, C., Karaffa, L.: D-galactose uptake is non-functional in the conidiospores of Aspergillus niger.
FEMS Microbiol. Lett. 329 198-203, 2012.

Fekete, É., Fekete, E., Irinyi, L., Karaffa, L., Árnyasi, M., Asadollahi, M., Karaffa, E.: Genetic diversity of a Botrytis cinerea cryptic species complex in Hungary.
Microbiol. Res. 167 283-291, 2012.

Fekete, E., Karaffa, L., Fekete, É., Seiboth, B., Kubicek, C., Flipphi, M.: Identification of a permease gene involved in lactose utilisation in Aspergillus nidulans.
Fungal Genet. Biol. 49 415-425, 2012.

Kubicek, C., Herrera-Estrella, A., Seidl-Seiboth, V., Martinez, D., Druzhinina, I., Thon, M., Zeilinger, S., Casas-Flores, S., Horwitz, B., Mukherjee, P., Mukherjee, M., Kredics, L., Alcaraz, L., Aerts, A., Antal, Z., Atanasova, L., Cervantes-Badillo, M., Challacombe, J., Chertkov, O., McCluskey, K., Coulpier, F., Deshpande, N., Döhren, H., Ebbole, D., Esquivel-Naranjo, E., Fekete, E., Flipphi, M., Glaser, F., Gómez-Rodríguez, E., Gruber, S., Han, C., Henrissat, B., Hermosa, R., Hernández-Oñate, M., Karaffa, L., Kosti, I., Le Crom, S., Lindquist, E., Lucas, S., Lübeck, M., Lübeck, P., Margeot, A., Metz, B., Misra, M., Nevalainen, H., Omann, M., Packer, N., Perrone, G., Uresti-Rivera, E., Salamov, A., Schmoll, M., Seiboth, B., Shapiro, H., Sukno, S., Tamayo-Ramos, J., Tisch, D., Wiest, A., Wilkinson, H., Zhang, M., Coutinho, P., Kenerley, C., Monte, E., Baker, S., Grigoriev, I.: Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.
Genome Biol. 12 (4), 1-15, 2011.

Bérczesné Szojka, A.: Magyarországi Botrytis cinerea gomba szabadföldi izolátumainak azoxystrobin rezisztencia vizsgálata.
In: Tudományos diákköri konferencia, 2011/2012. tanév őszi félév : Debrecen, 2011. október 20. : meghívó és programfüzet / [... összeáll. Gyüre Péter] ; [rend., közread. a] Debreceni Egyetem Mezőgazdaság-, Élelmiszertudományi és Környezetgazdálkodási Kar

Bérczesné Szojka, A., Asadollahi, M., Fekete, É., Fekete, E., Karaffa, L., Karaffa, E.: Magyarországi Botrytis cinerea izolátumok azoxystrobin rezisztenciájának vizsgálata real-time PCR technika segítségével.
Agrártud. közl. 43 41-44, 2011.